NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM139468 Query DataSets for GSM139468
Status Public on Apr 09, 2007
Title Ovarian_Tumor_Serous_KU-OS-018
Sample type RNA
 
Source name Ovarian_Tumor
Organism Homo sapiens
Characteristics Tumor_Type: Serous
stage: 1c
grade: N/A
B-canenin_nuclear_accumulation: N/A
CTNNB1_mutation: N/A
APC_mutation: N/A
PTEN_mutation: N/A
PTEN_immunohistochemistry: N/A
KRAS_mutation: N/A
PIK3CA_mutation: N/A
TP53_mutation: N/A
P53_immunohistochemistry: N/A
CEL_file_name: KU-OS-018.CEL
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol 3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description ovarian tumor: serous
Data processing Ann Arbor quantile-normalized trimmed-mean method
 
Submission date Oct 10, 2006
Last update date Apr 09, 2007
Contact name Rork Kuick
E-mail(s) [email protected]
Phone 734-936-9241
Organization name University of Michigan
Street address University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City Ann Arbor
State/province MI
ZIP/Postal code 48109-2029
Country USA
 
Platform ID GPL96
Series (1)
GSE6008 Human ovarian tumors and normal ovaries

Data table header descriptions
ID_REF
VALUE quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms

Data table
ID_REF VALUE
1007_s_at 4.020527012
1053_at 2.96425963
117_at 4.012457578
121_at 4.043362278
1255_g_at 2.663700925
1294_at 3.590841835
1316_at 2.758154622
1320_at 2.463892989
1405_i_at 3.053078443
1431_at 2.771587481
1438_at 2.879669206
1487_at 3.20871002
1494_f_at 2.890979597
1598_g_at 4.313487574
160020_at 3.697229343
1729_at 2.969415912
177_at 2.485721426
1773_at 2.656098202
179_at 3.220631019
1861_at 2.782472624

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM139468.CEL.gz 3.3 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap