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Sample GSM138550 Query DataSets for GSM138550
Status Public on Oct 04, 2006
Title Anergic1
Sample type RNA
 
Source name anergic Th1 T cell clone
Organism Mus musculus
Characteristics anergized CD4 T cell clone
Extracted molecule polyA RNA
Extraction protocol total RNA was extracted using Trizol method (Invitrogen)
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description we are interested in which genes are upregulated during T cell anergy. Thus,RNA from normal quiescent T cell clones were extracted to be compared to RNA extracted from anergic T cell clones
Data processing Affymetrix Microarray Suite 4.0
 
Submission date Oct 03, 2006
Last update date Oct 03, 2006
Contact name yuanyuan zha
E-mail(s) [email protected]
Phone 772-702-4812
Fax 773-702-7195
Organization name University of Chicago
Department Department of Pathology
Street address 910 E. 58th St. MKL051
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL81
Series (1)
GSE5960 T cell gene expression profile

Data table header descriptions
ID_REF
VALUE MAS4-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 20.6 A 0.749204
AFFX-MurIL10_at 17.2 A 0.544587
AFFX-MurIL4_at 26.1 A 0.327079
AFFX-MurFAS_at 24.4 A 0.645547
AFFX-BioB-5_at 202.2 M 0.046482
AFFX-BioB-M_at 304.4 P 0.002275
AFFX-BioB-3_at 170.3 M 0.046482
AFFX-BioC-5_at 645.7 P 0.000446
AFFX-BioC-3_at 467.9 P 0.000195
AFFX-BioDn-5_at 639.7 P 0.000147
AFFX-BioDn-3_at 3278.2 P 0.00034
AFFX-CreX-5_at 4989.1 P 0.000044
AFFX-CreX-3_at 8657.9 P 0.000044
AFFX-BioB-5_st 49.2 A 0.354453
AFFX-BioB-M_st 17.1 A 0.737173
AFFX-BioB-3_st 17.6 A 0.760937
AFFX-BioC-5_st 16.2 A 0.876428
AFFX-BioC-3_st 9.3 A 0.834139
AFFX-BioDn-5_st 54 A 0.262827
AFFX-BioDn-3_st 93 A 0.368438

Total number of rows: 12488

Table truncated, full table size 320 Kbytes.




Supplementary data files not provided

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