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Sample GSM138549 Query DataSets for GSM138549
Status Public on Oct 04, 2006
Title Control1
Sample type RNA
 
Source name Th1 T cell
Organism Mus musculus
Characteristics control CD4 T Cell clone
Extracted molecule polyA RNA
Extraction protocol total RNA was extracted using Trizol method (Invitrogen)
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description we are interested in which genes are upregulated during T cell anergy. Thus, RNA from normal quiescent T cell clones were extracted to be compared to RNA extracted from anergic T cell clones
Data processing Affymetrix Microarray Suite 4.0
 
Submission date Oct 03, 2006
Last update date Oct 03, 2006
Contact name yuanyuan zha
E-mail(s) [email protected]
Phone 772-702-4812
Fax 773-702-7195
Organization name University of Chicago
Department Department of Pathology
Street address 910 E. 58th St. MKL051
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platform ID GPL81
Series (1)
GSE5960 T cell gene expression profile

Data table header descriptions
ID_REF
VALUE MAS4-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 12.1 A 0.921998
AFFX-MurIL10_at 18.4 A 0.645547
AFFX-MurIL4_at 70.5 A 0.156732
AFFX-MurFAS_at 55.1 A 0.51489
AFFX-BioB-5_at 223.5 P 0.039661
AFFX-BioB-M_at 257.4 P 0.005565
AFFX-BioB-3_at 237.3 M 0.058444
AFFX-BioC-5_at 766.1 P 0.000258
AFFX-BioC-3_at 410.3 P 0.000446
AFFX-BioDn-5_at 625.5 P 0.000225
AFFX-BioDn-3_at 3829.3 P 0.000297
AFFX-CreX-5_at 5883 P 0.000044
AFFX-CreX-3_at 10317.2 P 0.000044
AFFX-BioB-5_st 70.9 A 0.313723
AFFX-BioB-M_st 30.6 A 0.824672
AFFX-BioB-3_st 25.9 A 0.724854
AFFX-BioC-5_st 22.7 A 0.824672
AFFX-BioC-3_st 13.5 A 0.772364
AFFX-BioDn-5_st 140.1 A 0.175328
AFFX-BioDn-3_st 34 A 0.559354

Total number of rows: 12488

Table truncated, full table size 321 Kbytes.




Supplementary data files not provided

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