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Sample GSM1350051 Query DataSets for GSM1350051
Status Public on Mar 19, 2014
Title Btg1;Btg2 dKO_BM B220+ CD43- cells
Sample type RNA
 
Source name BM B220+ CD43-
Organism Mus musculus
Characteristics strain: C57BL6/J
cell type: BM B220+ CD43-
genotype: Btg1;Btg2 dKO
Extracted molecule total RNA
Extraction protocol BM was isolated from tibia and femur by flushing. The BM B220+ CD43+ and B220+ CD43- fraction were sorted by flow cytometry. RNA was extracted QIAGEN RNeasy kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared using the Illumina Ambion Total Prep-96 Kit
 
Hybridization protocol Standard Illumina direct hybridization protocol
Scan protocol Standard Illumina direct hybridization scanning protocol
Description Hardy fractions DEF
Data processing The data were normalised using RMA normalisation with Arraystar
 
Submission date Mar 18, 2014
Last update date Mar 19, 2014
Contact name Blanca Scheijen
E-mail(s) [email protected]
Organization name Radboudumc
Lab Pediatric Oncology
Street address Kapittelweg 29
City Nijmegen
ZIP/Postal code 6525 EN
Country Netherlands
 
Platform ID GPL15097
Series (1)
GSE55997 BTG1 and BTG2 Regulate B Linege Commitment by Modulation of EBF1 Activity

Data table header descriptions
ID_REF
VALUE Log2 transformation and RMA normalized

Data table
ID_REF VALUE
0610006I08RIK 10.478
0610007C21RIK 10.07867
0610007P08RIK 4.20777
0610007P14RIK 9.62974
0610007P22RIK 8.64324
0610008C08RIK 2.90784
0610009B22RIK 8.44245
0610009D07RIK 5.06171
0610009O20RIK 8.42496
0610010D20RIK 3.13103
0610010E21RIK 9.69706
0610010K06RIK 10.5845
0610010K14RIK 9.13513
0610011L14RIK 3.15859
0610012A05RIK 2.48018
0610012D14RIK 3.97874
0610012G03RIK 10.46225
0610012H03RIK 2.96705
0610013E23RIK 3.68666
0610025P10RIK 6.79913

Total number of rows: 18138

Table truncated, full table size 271 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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