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Sample GSM133972 Query DataSets for GSM133972
Status Public on Jan 22, 2007
Title Birnbaum_1-2_src5-2_Rep2_ATH1
Sample type RNA
 
Source name SCR:GFP
Organism Arabidopsis thaliana
Characteristics Tissue: Marks the QC and the endodermis at least past the mature hair zone
Genetic background: Landsberg
Extracted molecule total RNA
Label biotin
 
Description Media: MS + 4.5% sucrose
Light: 16h light 8h dark
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Sep 01, 2006
Last update date Jan 22, 2007
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5749 A gene expression map of the Arabidopsis root

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.55715869140625E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 3.18024682617188E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 5.90785827636719E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 6.63275146484375E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.23798484802246E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.89518829345703E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 9.68691711425781E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 5.75000152587891E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 5.97811393737793E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 1.69056758880615E+001 A 3.34473013877869E-001
AFFX-r2-Bs-thr-5_s_at 7.00099039077759E+000 A 3.98925989866257E-001
AFFX-r2-Bs-thr-3_s_at 9.41570937633514E-001 A 8.05419981479645E-001
AFFX-r2-Bs-phe-M_at 6.15530776977539E+000 A 4.66064006090164E-001
AFFX-r2-Bs-phe-5_at 5.63094258308411E-001 A 8.05419981479645E-001
AFFX-r2-Bs-phe-3_at 1.44610977172852E+000 A 6.65526986122131E-001
AFFX-r2-Bs-lys-M_at 4.22678661346436E+000 A 1.49657994508743E-001
AFFX-r2-Bs-lys-5_at 6.80157852172852E+000 A 5.67627012729645E-001
AFFX-r2-Bs-lys-3_at 9.34548091888428E+000 P 1.85547005385160E-002
AFFX-r2-Bs-dap-M_at 4.39049530029297E+000 A 5.67627012729645E-001
AFFX-r2-Bs-dap-5_at 3.01526474952698E+000 A 2.46094003319740E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM133972.CEL.gz 2.3 Mb (ftp)(http) CEL

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