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Sample GSM1339631 Query DataSets for GSM1339631
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient R54 (U133A)
Sample type RNA
 
Source name synovial membrane patient R54 (osteoarthritis)
Organism Homo sapiens
Characteristics gender: female
age: 77
clinical status: osteoarthritis
Treatment protocol NSAID
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R54
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 388.7 P 0.001141
1053_at 160.4 P 0.00418
117_at 242.4 P 0.000673
121_at 806.2 P 0.004863
1255_g_at 47.7 A 0.175989
1294_at 407.1 P 0.005643
1316_at 109 P 0.001602
1320_at 216.2 P 0.009985
1405_i_at 125.3 P 0.001432
1431_at 43.2 M 0.05447
1438_at 654.2 P 0.001602
1487_at 472.2 P 0.02786
1494_f_at 159.4 M 0.05447
1598_g_at 4460.7 P 0.000219
160020_at 4181.2 P 0.001141
1729_at 476.3 P 0.004863
177_at 229.7 P 0.003585
1773_at 221.5 P 0.017001
179_at 666.9 P 0.048995
1861_at 209.9 P 0.001602

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339631_SynM-R54.CEL.gz 2.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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