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Sample GSM1339629 Query DataSets for GSM1339629
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient R52 (U133A)
Sample type RNA
 
Source name synovial membrane patient R52 (osteoarthritis)
Organism Homo sapiens
Characteristics gender: female
age: 71
clinical status: osteoarthritis
Treatment protocol None
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R52
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 532.3 P 0.00418
1053_at 128.6 P 0.024711
117_at 187.1 A 0.081337
121_at 1547.6 P 0.009985
1255_g_at 125.2 A 0.081337
1294_at 509.1 P 0.008689
1316_at 134.5 P 0.017001
1320_at 224.9 P 0.021866
1405_i_at 41.5 A 0.181343
1431_at 65.5 P 0.035163
1438_at 222.6 M 0.05447
1487_at 710 P 0.02786
1494_f_at 329 P 0.024711
1598_g_at 4309.4 P 0.000266
160020_at 1257.1 P 0.004863
1729_at 293.2 P 0.017001
177_at 219.5 P 0.035163
1773_at 157.8 A 0.089405
179_at 967.2 A 0.089405
1861_at 267.1 P 0.006532

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339629_SynM-R52.CEL.gz 2.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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