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Sample GSM1339628 Query DataSets for GSM1339628
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient R41 (U133A)
Sample type RNA
 
Source name synovial membrane patient R41 (osteoarthritis)
Organism Homo sapiens
Characteristics gender: female
age: 71
clinical status: osteoarthritis
Treatment protocol None
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R41
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 488.1 P 0.002617
1053_at 203.9 P 0.02786
117_at 230.7 P 0.002617
121_at 707.2 P 0.005643
1255_g_at 87.5 A 0.175989
1294_at 383.9 P 0.001354
1316_at 120.1 P 0.008689
1320_at 94.3 A 0.162935
1405_i_at 395.3 P 0.000762
1431_at 22.4 A 0.150527
1438_at 264 P 0.007543
1487_at 612.7 P 0.017001
1494_f_at 146.8 M 0.060419
1598_g_at 4066.9 P 0.000219
160020_at 1838.4 P 0.001354
1729_at 595 P 0.00418
177_at 337.8 P 0.000673
1773_at 233.9 P 0.013092
179_at 491.3 A 0.127645
1861_at 234 P 0.007543

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339628_SynM-R41.CEL.gz 2.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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