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Sample GSM1339626 Query DataSets for GSM1339626
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient R58 (U133A)
Sample type RNA
 
Source name synovial membrane patient R58 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 52
clinical status: rheumatoid arthritis
Treatment protocol NSAID, Quensyl (Hydrochloroquin)
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R58
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 434.6 P 0.0178
1053_at 260.1 P 0.003585
117_at 276.9 P 0.00418
121_at 1057.7 P 0.002228
1255_g_at 28.4 A 0.366636
1294_at 553.3 P 0.003203
1316_at 162.3 P 0.017001
1320_at 60 A 0.458816
1405_i_at 1554.6 P 0.000491
1431_at 51.4 P 0.043968
1438_at 136.6 A 0.218983
1487_at 524.9 P 0.035163
1494_f_at 238.9 M 0.060419
1598_g_at 4513.3 P 0.000219
160020_at 1138.7 P 0.014937
1729_at 624.9 P 0.013092
177_at 227.1 P 0.019304
1773_at 218.3 P 0.035163
179_at 525.1 A 0.204022
1861_at 279.3 M 0.05447

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1339626_SynM-R58.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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