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Sample GSM1339625 Query DataSets for GSM1339625
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient R57 (U133A)
Sample type RNA
 
Source name synovial membrane patient R57 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 35
clinical status: rheumatoid arthritis
Treatment protocol Cyclosporin, MTX, Prednis.
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R57
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 442.5 P 0.011447
1053_at 202 P 0.035163
117_at 410.8 P 0.006532
121_at 1058.1 P 0.00418
1255_g_at 39.4 A 0.67917
1294_at 488.8 P 0.001602
1316_at 160 P 0.001354
1320_at 51.6 A 0.302547
1405_i_at 881.3 P 0.002143
1431_at 77.4 A 0.150527
1438_at 210.2 A 0.204022
1487_at 442.9 P 0.043968
1494_f_at 334.8 A 0.234557
1598_g_at 3489.6 P 0.000266
160020_at 1364 P 0.005643
1729_at 515.6 P 0.014937
177_at 366.6 P 0.005643
1773_at 198.2 A 0.089405
179_at 452.7 A 0.138765
1861_at 231.7 P 0.021866

Total number of rows: 22283

Table truncated, full table size 595 Kbytes.




Supplementary file Size Download File type/resource
GSM1339625_SynM-R57.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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