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Sample GSM1339624 Query DataSets for GSM1339624
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient R46 (U133A)
Sample type RNA
 
Source name synovial membrane patient R46 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: male
age: 46
clinical status: rheumatoid arthritis
Treatment protocol MTX
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R46
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 542.8 P 0.008689
1053_at 248.5 P 0.000673
117_at 316 P 0.001602
121_at 2046.8 P 0.002228
1255_g_at 74.9 A 0.175989
1294_at 486.3 P 0.013092
1316_at 132.4 P 0.013092
1320_at 141.5 A 0.150527
1405_i_at 736.1 P 0.000491
1431_at 43.9 A 0.127645
1438_at 300.8 M 0.060419
1487_at 732.3 P 0.014937
1494_f_at 318.7 P 0.043968
1598_g_at 3613.5 P 0.000219
160020_at 1979.5 P 0.001892
1729_at 558.8 P 0.003585
177_at 259.5 P 0.006532
1773_at 146.2 A 0.07383
179_at 781.1 A 0.07383
1861_at 311.9 P 0.009985

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339624_SynM-R46.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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