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Sample GSM1339623 Query DataSets for GSM1339623
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient R32 (U133A)
Sample type RNA
 
Source name synovial membrane patient R32 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 56
clinical status: rheumatoid arthritis
Treatment protocol Prednis.
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R32
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 554.7 P 0.003067
1053_at 275.6 P 0.024711
117_at 203.2 P 0.002228
121_at 1091.5 P 0.004863
1255_g_at 65 A 0.218983
1294_at 412 P 0.007543
1316_at 172 P 0.001892
1320_at 137.4 A 0.089405
1405_i_at 831.2 P 0.000613
1431_at 48.2 A 0.098054
1438_at 302.9 P 0.013092
1487_at 624.5 P 0.031336
1494_f_at 201.5 P 0.02786
1598_g_at 3115.1 P 0.000219
160020_at 1528.7 P 0.002228
1729_at 586 P 0.00418
177_at 149.8 P 0.009985
1773_at 175.7 M 0.060419
179_at 679.3 A 0.07383
1861_at 181.7 P 0.021866

Total number of rows: 22283

Table truncated, full table size 595 Kbytes.




Supplementary file Size Download File type/resource
GSM1339623_SynM-R32.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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