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Sample GSM1339622 Query DataSets for GSM1339622
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient R51 (U133A)
Sample type RNA
 
Source name synovial membrane patient R51 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 49
clinical status: rheumatoid arthritis
Treatment protocol NSAID, Tilidin (Opiat)
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R51
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 482.8 P 0.007543
1053_at 109.7 M 0.060419
117_at 266.9 P 0.004863
121_at 1143 P 0.001602
1255_g_at 48.8 A 0.541184
1294_at 435 P 0.001354
1316_at 164.8 P 0.002228
1320_at 100.7 A 0.302547
1405_i_at 1132.4 P 0.000944
1431_at 49.9 A 0.066865
1438_at 365.5 P 0.017001
1487_at 730.7 P 0.021866
1494_f_at 223.4 P 0.048995
1598_g_at 3958.6 P 0.000219
160020_at 2851.6 P 0.001602
1729_at 701.7 P 0.001892
177_at 223.5 P 0.019304
1773_at 262.7 P 0.02786
179_at 487.6 A 0.098054
1861_at 283.7 P 0.019304

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339622_SynM-R51.CEL.gz 2.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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