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Sample GSM1339621 Query DataSets for GSM1339621
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient R29 (U133A)
Sample type RNA
 
Source name synovial membrane patient R29 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: male
age: 39
clinical status: rheumatoid arthritis
Treatment protocol NSAID, Azulfidine, Prednis.
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R29
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 561.7 P 0.003067
1053_at 200.4 P 0.003067
117_at 288.4 P 0.001141
121_at 1239.8 P 0.003067
1255_g_at 59.5 A 0.204022
1294_at 487.9 P 0.005643
1316_at 162.8 P 0.005643
1320_at 182.8 P 0.039365
1405_i_at 846 P 0.000762
1431_at 35.7 A 0.081337
1438_at 225 P 0.039365
1487_at 655 P 0.02786
1494_f_at 249.3 A 0.081337
1598_g_at 3751.2 P 0.000388
160020_at 1558.6 P 0.002228
1729_at 518.3 P 0.014937
177_at 215.3 P 0.013092
1773_at 245.7 P 0.031336
179_at 771.2 A 0.07383
1861_at 281.5 M 0.060419

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339621_SynM-R29.CEL.gz 2.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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