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Sample GSM1339619 Query DataSets for GSM1339619
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient K49 (U133A)
Sample type RNA
 
Source name synovial membrane patient K49 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 59
clinical status: rheumatoid arthritis
Treatment protocol NSAID, MTX, Prednis.
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
K49
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 647.4 P 0.003067
1053_at 219.4 P 0.005643
117_at 323 P 0.001141
121_at 1225.7 P 0.00418
1255_g_at 57.3 A 0.204022
1294_at 468.8 P 0.001354
1316_at 114.8 P 0.008689
1320_at 279.5 P 0.017001
1405_i_at 283.2 P 0.000762
1431_at 50.2 P 0.035163
1438_at 132.9 A 0.218983
1487_at 666.8 P 0.021866
1494_f_at 249.1 P 0.021866
1598_g_at 2682.5 P 0.000805
160020_at 1447.3 P 0.00418
1729_at 508.7 P 0.002617
177_at 196.3 P 0.024711
1773_at 176.6 P 0.039365
179_at 659.3 A 0.098054
1861_at 271.3 P 0.011447

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339619_SynM-K49.CEL.gz 2.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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