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Sample GSM133787 Query DataSets for GSM133787
Status Public on Jan 08, 2007
Title Brueggemann_A-5-Brueg-Mck_SLD
Sample type RNA
 
Source name Col-5
Organism Arabidopsis thaliana
Characteristics Stock Code: N1688
Developmental stage: 3.90: Rosette Growth Complete
Tissue: whole above ground rosettes
Treatment protocol "Mock" TREATMENT:Plants were sprayed with H2O as a mock treatment.After spraying, plants were coverd with propagator lids and transferred to an 18 degree C (day and night) growth room for 3 days before sampling (sampling done 6 hours into the light period)
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 70%
Temperature: 21degreeC (day) 16degreeC (night)
Lighting: 12 hr light: 12 hr dark
Medium: Compost
Nutrients: none
Water: top watering as needed 1-2 times a week
Stratification: no
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Sep 01, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 1.74410000000000E+003 P 2.44000000000000E-004
AFFX-r2-P1-cre-3_at 2.08860000000000E+003 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-5_at 3.63700000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-3_at 4.09500000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioC-5_at 9.65000000000000E+001 P 2.44000000000000E-004
AFFX-r2-Ec-bioC-3_at 1.19100000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioB-M_at 4.18000000000000E+001 P 1.95300000000000E-003
AFFX-r2-Ec-bioB-5_at 4.97000000000000E+001 P 7.32000000000000E-004
AFFX-r2-Ec-bioB-3_at 3.33000000000000E+001 P 1.22100000000000E-003
AFFX-r2-Bs-thr-M_s_at 2.20000000000000E+000 A 5.00000000000000E-001
AFFX-r2-Bs-thr-5_s_at 1.55000000000000E+001 A 1.71387000000000E-001
AFFX-r2-Bs-thr-3_s_at 4.10000000000000E+000 A 6.65527000000000E-001
AFFX-r2-Bs-phe-M_at 4.00000000000000E-001 A 8.28613000000000E-001
AFFX-r2-Bs-phe-5_at 5.00000000000000E-001 A 7.80518000000000E-001
AFFX-r2-Bs-phe-3_at 8.60000000000000E+000 A 2.74170000000000E-001
AFFX-r2-Bs-lys-M_at 2.40000000000000E+000 A 3.98926000000000E-001
AFFX-r2-Bs-lys-5_at 3.50000000000000E+000 A 5.00000000000000E-001
AFFX-r2-Bs-lys-3_at 7.70000000000000E+000 A 6.76270000000000E-002
AFFX-r2-Bs-dap-M_at 2.00000000000000E-001 A 8.50342000000000E-001
AFFX-r2-Bs-dap-5_at 4.00000000000000E-001 A 9.69727000000000E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM133787.CEL.gz 2.4 Mb (ftp)(http) CEL

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