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Sample GSM133784 Query DataSets for GSM133784
Status Public on Jan 08, 2007
Title Brueggemann_A-2-Brueg-uva_SLD
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1093
Developmental stage: 3.90: Rosette Growth Complete
Tissue: whole above ground rosettes
Treatment protocol UV-A TREATMENT: UV-A source: Philips TL12 40W tubes covered with 1 layer (0.1mm) of "Mylar D"
UV-A fluence rate (320nm-400): 3.7 micromol m-2 s-1
Background photosynthetically active radiation (400nm-700nm): 20 micromol m-2 s-1
Duration: 1.5 photoperiods (samples taken 6 hours into the second day of treatment with supplementary UV-B)
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 70%
Temperature: 21?C (day) 16?C (night)
Lighting: 12 hr light: 12 hr dark
Medium: Compost
Nutrients: none
Water: top watering as needed 1-2 times a week
Stratification: no
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Sep 01, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.30900000000000E+003 P 2.44000000000000E-004
AFFX-r2-P1-cre-3_at 2.87990000000000E+003 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-5_at 4.69000000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-3_at 5.91500000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioC-5_at 1.13700000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioC-3_at 1.52100000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioB-M_at 6.36000000000000E+001 P 1.22100000000000E-003
AFFX-r2-Ec-bioB-5_at 6.05000000000000E+001 P 1.95300000000000E-003
AFFX-r2-Ec-bioB-3_at 3.54000000000000E+001 P 2.44000000000000E-004
AFFX-r2-Bs-thr-M_s_at 2.60000000000000E+000 A 7.80518000000000E-001
AFFX-r2-Bs-thr-5_s_at 1.07000000000000E+001 A 2.19482000000000E-001
AFFX-r2-Bs-thr-3_s_at 1.80000000000000E+000 A 8.70361000000000E-001
AFFX-r2-Bs-phe-M_at 3.10000000000000E+000 A 5.67627000000000E-001
AFFX-r2-Bs-phe-5_at 2.00000000000000E-001 A 7.80518000000000E-001
AFFX-r2-Bs-phe-3_at 4.90000000000000E+000 A 3.66211000000000E-001
AFFX-r2-Bs-lys-M_at 2.30000000000000E+000 A 3.34473000000000E-001
AFFX-r2-Bs-lys-5_at 2.90000000000000E+000 A 3.34473000000000E-001
AFFX-r2-Bs-lys-3_at 7.00000000000000E+000 A 2.74170000000000E-001
AFFX-r2-Bs-dap-M_at 1.10000000000000E+000 A 6.01074000000000E-001
AFFX-r2-Bs-dap-5_at 1.10000000000000E+000 A 8.88428000000000E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM133784.CEL.gz 2.3 Mb (ftp)(http) CEL

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