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Sample GSM133783 Query DataSets for GSM133783
Status Public on Jan 08, 2007
Title Brueggemann_A-1-Brueg-uvb_SLD
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1093
Developmental stage: 3.90: Rosette Growth Complete
Tissue: whole above ground rosettes
Treatment protocol UV-B TREATMENT: UV-B source: Philips TL12 40W tubes covered with 1 layer (0.12mm) of "Diacel" cellulose diacetate UV-B fluence rate (280nm-320nm): 4.5 micromol m-2 s-1
Background photosynthetically active radiation (400nm-700nm): 20 micromol m-2 s-1
Duration: 1.5 photoperiods (samples taken 6 hours into the second day of treatment with supplementary UV-B)
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 70%
Temperature: 21?C (day) 16?C (night)
Lighting: 12 hr light: 12 hr dark
Medium: Compost
Nutrients: none
Water: top watering as needed 1-2 times a week
Stratification: no
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Sep 01, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.03990000000000E+003 P 2.44000000000000E-004
AFFX-r2-P1-cre-3_at 2.43760000000000E+003 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-5_at 4.19200000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-3_at 5.23700000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioC-5_at 1.10600000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioC-3_at 1.44500000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioB-M_at 5.37000000000000E+001 P 7.32000000000000E-004
AFFX-r2-Ec-bioB-5_at 4.96000000000000E+001 P 7.32000000000000E-004
AFFX-r2-Ec-bioB-3_at 3.78000000000000E+001 P 2.44000000000000E-004
AFFX-r2-Bs-thr-M_s_at 1.60000000000000E+000 A 7.80518000000000E-001
AFFX-r2-Bs-thr-5_s_at 7.80000000000000E+000 A 2.19482000000000E-001
AFFX-r2-Bs-thr-3_s_at 6.00000000000000E+000 A 5.33936000000000E-001
AFFX-r2-Bs-phe-M_at 5.00000000000000E-001 A 5.00000000000000E-001
AFFX-r2-Bs-phe-5_at 3.90000000000000E+000 A 5.67627000000000E-001
AFFX-r2-Bs-phe-3_at 1.20000000000000E+000 A 7.25830000000000E-001
AFFX-r2-Bs-lys-M_at 2.00000000000000E+000 A 2.74170000000000E-001
AFFX-r2-Bs-lys-5_at 1.50000000000000E+000 A 4.66064000000000E-001
AFFX-r2-Bs-lys-3_at 6.70000000000000E+000 A 9.52150000000000E-002
AFFX-r2-Bs-dap-M_at 1.50000000000000E+000 A 5.33936000000000E-001
AFFX-r2-Bs-dap-5_at 6.00000000000000E-001 A 9.32373000000000E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM133783.CEL.gz 2.4 Mb (ftp)(http) CEL

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