GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM133039
Query DataSets for GSM133039
Status
Public on Jan 08, 2007
Title
2510
Sample type
RNA
Source name
Col-0
Organism
Arabidopsis thaliana
Characteristics
Stock Code: N1092
Developmental stage: 4-week old plants at 10-11 rossette lead stage (just before bolting)
Tissue: leaf
Treatment protocol
Mock treatment (10mM MgCl2 solution), 24h
Extracted molecule
total RNA
Label
biotin
Description
na
Data processing
The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
Submission date
Aug 31, 2006
Last update date
Aug 28, 2018
Contact name
Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s)
[email protected]
Phone
+44 (0)115 951 3237
Fax
+44 (0)115 951 3297
URL
http://arabidopsis.info/
Organization name
Nottingham Arabidopsis Stock Centre (NASC)
Department
School of Biosciences, University of Nottingham
Street address
Sutton Bonington Campus
City
Loughborough
ZIP/Postal code
LE12 5RD
Country
United Kingdom
Platform ID
GPL198
Series (1)
GSE5685
AtGenExpress: Pathogen Series: Pseudomonas half leaf injection
Relations
Reanalyzed by
GSE118579
Reanalyzed by
GSE119083
Data table header descriptions
ID_REF
VALUE
This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL
A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE
A p-value indicating the significance of the Detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-r2-P1-cre-5_at
2.70097680664062E+003
P
2.44141003349796E-004
AFFX-r2-P1-cre-3_at
3.51655151367188E+003
P
2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at
5.67644226074219E+002
P
2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at
6.65630004882812E+002
P
2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at
1.31475738525391E+002
P
2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at
2.27041946411133E+002
P
2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at
7.53477783203125E+001
P
1.95312988944352E-003
AFFX-r2-Ec-bioB-5_at
6.10672798156738E+001
P
7.32421991415322E-004
AFFX-r2-Ec-bioB-3_at
6.14987258911133E+001
P
2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at
1.60102236270905E+000
A
7.80517995357513E-001
AFFX-r2-Bs-thr-5_s_at
1.32153377532959E+001
A
1.49657994508743E-001
AFFX-r2-Bs-thr-3_s_at
1.30149519443512E+000
A
8.28612983226776E-001
AFFX-r2-Bs-phe-M_at
1.40759682655334E+000
A
6.33789002895355E-001
AFFX-r2-Bs-phe-5_at
6.74241900444031E-001
A
7.53906011581421E-001
AFFX-r2-Bs-phe-3_at
1.05119600296021E+001
A
2.46094003319740E-001
AFFX-r2-Bs-lys-M_at
1.66102039813995E+000
A
5.00000000000000E-001
AFFX-r2-Bs-lys-5_at
3.32448649406433E+000
A
4.66064006090164E-001
AFFX-r2-Bs-lys-3_at
3.96320414543152E+000
A
1.71387001872063E-001
AFFX-r2-Bs-dap-M_at
2.75663757324219E+000
A
5.67627012729645E-001
AFFX-r2-Bs-dap-5_at
3.10639667510986E+000
A
5.67627012729645E-001
Total number of rows:
22810
Table truncated, full table size
1250 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM133039.CEL.gz
2.3 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
