NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1325266 Query DataSets for GSM1325266
Status Public on Jun 20, 2014
Title TLwSLT_3
Sample type RNA
 
Source name Tumor liver Sorafenib-treated long-term (83d)
Organism Mus musculus
Characteristics strain: C57BL6n
age: 12-15 weeks
tissue: liver
Treatment protocol 60 mg/kg oral application of Sorafenib for 14d and 83d (LT) or equal amount of vehicle solution for 14d
Extracted molecule total RNA
Extraction protocol twice TRIZOL extraction according to the manufactur's protocol
Label biotin
Label protocol not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Chip ID: 6085341051
Position: D
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Feb 10, 2014
Last update date Jun 20, 2014
Contact name Anja Runge
E-mail(s) [email protected]
Organization name German Cancer Research Center
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL17543
Series (1)
GSE54857 Whole genome profiling of whole liver lysates of vehicle and Sorafenib-treated iAST mice

Data table header descriptions
ID_REF
VALUE quantile normalized
TLwSLT_3_6085341051_D.sd
TLwSLT_3_6085341051_D.pvalue
TLwSLT_3_6085341051_D.nbeads

Data table
ID_REF VALUE TLwSLT_3_6085341051_D.sd TLwSLT_3_6085341051_D.pvalue TLwSLT_3_6085341051_D.nbeads
ILMN_1250052 97.06984339 24.66456303 0.122590699 33
ILMN_3122480 95.42332291 27.13724823 0.211089717 41
ILMN_2599935 172.5530757 42.86470992 3.55021E-15 41
ILMN_2675543 103.102437 24.91952319 0.004148919 39
ILMN_2686883 93.13603098 16.80419255 0.335767753 39
ILMN_2751818 96.60525731 25.69923982 0.117233299 45
ILMN_2728634 101.50694 23.75919715 0.004660011 46
ILMN_3040515 96.74156833 26.30141218 0.173602892 28
ILMN_2711608 87.51287366 13.81655385 0.978800272 42
ILMN_1232875 100.9413758 20.594441 0.002529023 46
ILMN_1258507 91.92317755 19.05884649 0.507027009 30
ILMN_2746142 96.55276565 26.81107735 0.17929043 30
ILMN_1252690 106.6620262 26.35334415 0.001156365 35
ILMN_2655499 92.43444884 19.41802743 0.442960615 39
ILMN_1252870 97.38885739 21.33340386 0.066153121 37
ILMN_1248179 81.75726718 15.14514143 0.999987489 48
ILMN_2649955 127.0676125 37.43951922 3.27999E-07 40
ILMN_2628708 116.658718 27.85462714 3.75161E-07 43
ILMN_3024781 91.61832181 18.76755479 0.552942417 47
ILMN_2705628 101.3812807 24.60532208 0.022698269 30

Total number of rows: 26512

Table truncated, full table size 1337 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap