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Sample GSM1325258 Query DataSets for GSM1325258
Status Public on Jun 20, 2014
Title TLwV14d_2
Sample type RNA
 
Source name Tumor liver vehicle-treated 14d
Organism Mus musculus
Characteristics strain: C57BL6n
age: 12-15 weeks
tissue: liver
Treatment protocol 60 mg/kg oral application of Sorafenib for 14d and 83d (LT) or equal amount of vehicle solution for 14d
Extracted molecule total RNA
Extraction protocol twice TRIZOL extraction according to the manufactur's protocol
Label biotin
Label protocol not provided
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Chip ID: 6085341051
Position: G
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Feb 10, 2014
Last update date Jun 20, 2014
Contact name Anja Runge
E-mail(s) [email protected]
Organization name German Cancer Research Center
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL17543
Series (1)
GSE54857 Whole genome profiling of whole liver lysates of vehicle and Sorafenib-treated iAST mice

Data table header descriptions
ID_REF
VALUE quantile normalized
TLwV14d_2_6085341051_G.sd
TLwV14d_2_6085341051_G.pvalue
TLwV14d_2_6085341051_G.nbeads

Data table
ID_REF VALUE TLwV14d_2_6085341051_G.sd TLwV14d_2_6085341051_G.pvalue TLwV14d_2_6085341051_G.nbeads
ILMN_1250052 97.65718881 22.42788292 0.038520112 44
ILMN_3122480 89.26514454 21.81856781 0.749858739 43
ILMN_2599935 170.4929594 32.45515909 2.47517E-16 35
ILMN_2675543 99.50450393 23.20623728 0.012179217 46
ILMN_2686883 86.70999066 13.57368281 0.982385433 38
ILMN_2751818 93.13247739 15.93016949 0.289794993 31
ILMN_2728634 101.0849887 20.28046051 0.00222023 41
ILMN_3040515 89.53157238 12.83068173 0.817883053 35
ILMN_2711608 90.37118299 17.72672972 0.660830766 41
ILMN_1232875 97.76027907 18.62976446 0.014125626 46
ILMN_1258507 83.85657995 14.16699977 0.999814664 50
ILMN_2746142 93.57035135 24.29379088 0.321675888 31
ILMN_1252690 99.40865753 22.60622615 0.035521842 29
ILMN_2655499 86.00718343 14.96089085 0.98322176 36
ILMN_1252870 99.05999413 17.17108911 0.00424866 40
ILMN_1248179 88.75919169 17.3098037 0.852544339 44
ILMN_2649955 121.9481594 23.88275891 2.10212E-08 32
ILMN_2628708 130.0705446 25.91831826 1.09106E-13 47
ILMN_3024781 88.02456704 16.96694452 0.888063623 36
ILMN_2705628 106.2500094 23.35875723 7.03729E-05 44

Total number of rows: 26512

Table truncated, full table size 1337 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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