NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM131416 Query DataSets for GSM131416
Status Public on Jan 08, 2007
Title AtGen_6-8112_Woundingstress-Shoots-0.5h_Rep2
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Shoots
Treatment protocol At day 16, stress treatment started at 3 hours of light treatment.
Wounding stress (Punctured with pins), Group Harter
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 50%
Temperature: 24
Lighting: 16 hour days
Medium: Murashige and Skoog
Water: N/A
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 3.57088330078125E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 4.39979394531250E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 5.73197631835938E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 8.03083251953125E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 2.39249908447266E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 2.40042297363281E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 1.08419448852539E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 7.64689636230469E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 8.23043975830078E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 4.72359514236450E+000 A 6.33789002895355E-001
AFFX-r2-Bs-thr-5_s_at 1.14274358749390E+001 A 9.52147990465164E-002
AFFX-r2-Bs-thr-3_s_at 1.76373136043549E+000 A 8.28612983226776E-001
AFFX-r2-Bs-phe-M_at 4.78581190109253E-001 A 7.25830018520355E-001
AFFX-r2-Bs-phe-5_at 6.85994863510132E-001 A 8.70360970497131E-001
AFFX-r2-Bs-phe-3_at 5.42761039733887E+000 A 3.66210997104645E-001
AFFX-r2-Bs-lys-M_at 1.65118646621704E+000 A 6.96289002895355E-001
AFFX-r2-Bs-lys-5_at 1.17250013351440E+000 A 6.65526986122131E-001
AFFX-r2-Bs-lys-3_at 1.22170486450195E+001 A 9.52147990465164E-002
AFFX-r2-Bs-dap-M_at 3.40492278337479E-001 A 7.53906011581421E-001
AFFX-r2-Bs-dap-5_at 9.23800051212311E-001 A 9.43848013877869E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM131416.CEL.gz 2.2 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap