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Status
Public on Mar 16, 2004
Title
germ cells on STO day 5 GPL342
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 5 days
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 3.834).
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
[email protected] Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL342 Series (1)
Data table header descriptions ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1790.9
P
0.000754
AFFX-BioB-M_at
2719.1
P
0.000052
AFFX-BioB-3_at
2080.6
P
0.000044
AFFX-BioC-5_at
4105.3
P
0.000044
AFFX-BioC-3_at
2383.6
P
0.000052
AFFX-BioDn-5_at
3434.2
P
0.000052
AFFX-BioDn-3_at
10903.5
P
0.000044
AFFX-CreX-5_at
34740.2
P
0.000044
AFFX-CreX-3_at
35430
P
0.000044
AFFX-DapX-5_at
57.4
A
0.116113
AFFX-DapX-M_at
43.4
A
0.300606
AFFX-DapX-3_at
7.8
A
0.897835
AFFX-LysX-5_at
16.1
A
0.672921
AFFX-LysX-M_at
7.3
A
0.724854
AFFX-LysX-3_at
26.6
A
0.760937
AFFX-PheX-5_at
3.5
A
0.996405
AFFX-PheX-M_at
7.2
A
0.659339
AFFX-PheX-3_at
96
A
0.205732
AFFX-ThrX-5_at
5.3
A
0.957038
AFFX-ThrX-M_at
22.9
A
0.617401
15333 407 Kbytes .Supplementary file Size Download File type/resource GSM12798.CEL.gz
2.4 Mb
(ftp) (http) CEL
