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Status
Public on Mar 08, 2007
Title
Sh-Mt-Gi vs Mt-shoot, rep5
Sample type
RNA
Channel 1 Source name
Sh-Mt-Gi, Cy3
Organism
Medicago truncatula Characteristics
Shoot tissues from Glomus intraradices inoculated Medicago truncatula plants
Extracted molecule
total RNA
Label
Cy3
Channel 2 Source name
Mt-shoot, Cy5
Organism
Medicago truncatula Characteristics
Shoot tissues from Glomus intraradices mock-inoculated Medicago truncatula plants
Extracted molecule
total RNA
Label
Cy5
Description
Gene expression data of Sh-Mt-Gi vs Mt shoot samples
Data processing
Normalization and analysis of microarray data were performed using Genespring software (version 6.2, Silicon Genetics, CA, USA). For each experiment, data from six slides were imported into Genespring software and values for all spots on the arrays were normalized with per spot and per chip intensity dependent (Lowess) normalization, using 20% of the data to calculate the Lowess fit at each point.
Submission date
Aug 07, 2006
Last update date
Aug 08, 2006
Contact name
Maria J. Harrison
E-mail(s)
[email protected] Phone
(607) 254-6472
Fax
(607) 254-6779
Organization name
Boyce Thompson Institute for Plant Research
Lab
Harrison
Street address
Tower Road, Cornell Campus
City
Ithaca
State/province
NY
ZIP/Postal code
14853
Country
USA
Platform ID
GPL4059 Series (2)
GSE5472 Gene expression data from Sh-Mt-Gi vs Mt shoot tissues
GSE5477 Arbuscular mycorrhizal symbioses
Data table header descriptions ID_REF VALUE log2 of Lowess normalized ratio with flagged values removed
Mt Sh-Mt signal intensity
Sh-Mt-Gi Sh-Mt-Gi signal intensity
FLAGS 1 denotes satisfactory features, while 0 denotes features that did not meet
RATIO Lowess normalized ratio of Sh-Mt-Gi signal divided by Sh-Mt signal
Data table ID_REF VALUE Mt Sh-Mt-Gi FLAGS RATIO MT000001
-0.2688
1860.00
1546.00
1
0.83
MT000002
-0.7131
14498.00
8824.00
1
0.61
MT000003
0.4330
8689.00
11690.00
1
1.35
MT000004
-0.1203
1758.00
1618.00
1
0.92
MT000005
0.3334
2919.00
3681.00
1
1.26
MT000006
0.3561
2215.00
2835.00
1
1.28
MT000007
-0.8110
3117.00
1788.00
1
0.57
MT000008
-1.5146
707.80
247.20
1
0.35
MT000009
-0.9159
5213.00
2766.00
1
0.53
MT000010
-0.2345
2120.00
1792.00
1
0.85
MT000011
-0.4739
15485.00
11076.00
1
0.72
MT000012
-0.3585
1678.00
1306.00
1
0.78
MT000013
-0.0145
1343.00
1329.00
1
0.99
MT000014
-0.4739
2069.00
1480.00
1
0.72
MT000015
-0.3959
7273.00
5497.00
1
0.76
MT000016
0.2510
1797.00
2131.00
1
1.19
MT000017
0.1763
5925.00
6689.00
1
1.13
MT000018
0.4330
6162.00
8346.00
1
1.35
MT000019
-0.5353
7582.00
5223.00
1
0.69
MT000020
-0.2009
3014.00
2634.00
1
0.87
16086 610 Kbytes .Supplementary data files not provided
