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Sample GSM124891

Query DataSets for GSM124891

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_0424, rep3

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_0424

Organism

Characteristics

Charolais, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from a charolais fetal calf at 260 days of gestation (male).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.60	90	1428	1436	297	180	309	79	0	874	859	185	56	99	19	0	0	0.609
2	null	100	386	402	125	181	297	80	0	126	126	42	56	88	22	0	-50	1.55
3	0.16	120	1500	1365	445	131	143	50	0	1393	1253	386	55	57	20	0	0	0.033
4	-0.64	110	831	801	173	139	142	52	0	928	915	142	53	56	19	0	0	-0.339
5	-0.26	110	2218	2037	806	133	155	46	0	3164	2897	811	54	73	19	0	0	-0.577
6	-0.63	90	639	628	142	134	168	50	0	537	531	63	61	91	23	0	0	0.085
7	null	80	379	392	99	127	134	51	0	88	84	28	54	55	17	0	0	2.89
8	null	120	570	571	191	126	141	48	0	80	81	32	54	56	19	0	0	4.094
9	0.12	100	1008	963	246	132	147	50	0	737	697	174	54	55	20	0	0	0.359
10	-0.37	100	498	497	127	136	143	50	0	246	247	76	54	55	20	0	0	0.915
11	0.74	110	8369	7554	2175	164	350	65	0	8113	7241	2037	55	181	19	0	0	0.026
12	-0.39	100	704	710	159	197	377	96	0	437	441	100	55	187	18	0	0	0.408
13	0.99	120	2144	2032	444	166	206	83	0	1239	1223	301	56	75	20	0	0	0.742
14	-0.14	100	2090	1886	727	141	160	61	0	2673	2360	823	55	58	18	0	0	-0.426
15	-0.40	100	2689	2477	656	201	272	83	0	4312	3909	977	54	110	19	0	0	-0.775
16	-0.06	100	879	870	178	238	322	130	0	503	510	117	56	107	19	0	0	0.52
17	0.49	120	2661	2530	784	223	268	121	0	2261	2059	727	52	54	17	0	0	0.142
18	null	100	418	410	129	274	337	149	0	105	106	38	68	84	25	0	-50	1.96
19	0.19	120	2174	2144	381	293	312	155	0	2044	1964	415	67	85	26	0	0	-0.072
20	null	120	532	544	124	255	277	135	0	91	96	31	56	68	22	0	0	2.984

Total number of rows: 22176

Table truncated, full table size 1539 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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