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Sample GSM124888

Query DataSets for GSM124888

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_0423, rep4

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_0423

Organism

Characteristics

Charolais, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from a charolais fetal calf at 260 days of gestation (male).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.26	100	1165	1173	279	203	216	71	0	626	591	166	50	63	23	0	0	0.74
2	null	80	717	735	171	205	213	72	0	108	108	37	53	58	25	0	-100	3.219
3	0.50	100	1643	1611	298	226	246	82	0	955	940	143	52	59	23	0	0	0.65
4	-0.04	100	1085	1060	271	264	794	99	0	622	615	134	50	116	24	0	0	0.521
5	0.10	100	1950	1830	523	276	803	102	0	1659	1493	466	48	114	23	0	0	0.055
6	null	80	1003	1023	219	239	257	78	0	271	278	70	53	58	24	0	-100	1.809
7	null	90	846	872	240	212	227	72	0	93	99	57	49	52	24	0	-100	3.849
8	null	110	1036	1050	227	228	242	75	0	87	89	33	48	50	21	0	-100	4.373
9	0.84	90	1646	1610	315	238	253	88	0	702	696	149	47	52	22	0	0	1.104
10	null	90	1023	994	203	247	254	91	0	356	355	68	49	52	22	0	-100	1.338
11	0.68	110	6509	6148	1325	269	295	98	0	5356	4892	1405	49	64	21	0	0	0.234
12	0.77	90	1103	1138	267	285	315	89	0	285	273	82	50	68	21	0	0	1.799
13	1.37	110	1862	1812	367	303	346	104	0	524	525	95	50	63	21	0	0	1.718
14	0.35	90	2257	2191	533	291	330	101	0	1673	1650	372	50	63	21	0	0	0.277
15	0.20	90	2896	2684	657	272	409	105	0	2699	2600	389	53	156	24	0	0	-0.012
16	0.60	100	1052	1166	553	261	351	101	0	317	364	208	54	126	26	0	0	1.589
17	0.57	110	2165	2173	322	256	267	84	0	1365	1314	265	52	56	23	0	0	0.54
18	null	70	928	942	158	241	256	81	0	93	99	38	51	54	22	0	-100	4.032
19	0.90	120	2323	2256	443	241	284	99	0	1173	1120	256	49	53	21	0	0	0.889
20	null	130	1364	1642	1522	220	259	92	0	95	128	174	47	51	21	0	-100	4.575

Total number of rows: 22176

Table truncated, full table size 1529 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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