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Sample GSM124886

Query DataSets for GSM124886

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_0423, rep2

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_0423

Organism

Characteristics

Charolais, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from a charolais fetal calf at 260 days of gestation (male).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.08	110	1116	1098	296	154	180	53	0	662	614	159	62	77	25	0	0	0.681
2	null	90	562	554	141	145	157	50	0	122	121	35	56	58	24	0	0	2.66
3	0.10	110	1646	1565	379	143	166	63	0	1299	1287	242	62	71	25	0	0	0.281
4	-0.68	100	793	794	183	140	156	60	0	790	738	220	61	72	24	0	0	-0.159
5	-0.17	100	1603	1456	438	136	143	54	0	1640	1464	502	63	66	26	0	0	-0.104
6	-0.41	90	668	690	156	142	147	57	0	371	356	68	62	67	24	0	0	0.767
7	null	90	424	448	138	144	153	53	0	101	103	34	63	67	23	0	0	2.881
8	null	110	682	676	166	134	139	54	0	105	113	44	57	61	22	0	0	3.513
9	-0.15	90	1067	996	261	139	146	58	0	805	780	156	59	64	22	0	0	0.315
10	-0.55	90	742	743	171	133	142	56	0	582	586	125	59	66	20	0	0	0.22
11	0.27	110	5352	4583	1689	128	209	48	0	5393	4670	1621	64	121	23	0	0	-0.029
12	0.02	90	745	732	147	126	214	49	0	314	321	84	65	124	24	0	0	1.314
13	0.47	120	1355	1354	415	131	229	53	0	647	599	184	60	175	24	0	0	1.06
14	-0.33	100	1310	1202	453	132	158	53	0	1417	1277	555	62	66	22	0	0	-0.202
15	-0.21	100	2197	2023	608	125	142	51	0	2672	2550	612	64	72	25	0	0	-0.332
16	-0.11	90	676	683	159	141	157	60	0	279	283	64	64	73	27	0	0	1.315
17	-0.11	110	1361	1340	293	134	147	54	0	1208	1203	181	64	67	24	0	0	0.101
18	null	80	459	454	88	136	145	59	0	101	99	31	59	62	27	0	0	2.943
19	0.26	120	1500	1428	326	142	156	61	0	954	911	223	60	65	27	0	0	0.603
20	null	130	596	624	148	155	164	66	0	78	84	33	54	60	24	0	0	4.2

Total number of rows: 22176

Table truncated, full table size 1523 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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