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Sample GSM124884

Query DataSets for GSM124884

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_0422, rep4

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_0422

Organism

Characteristics

Charolais, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from a charolais fetal calf at 260 days of gestation (male).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.35	100	1168	1150	258	140	153	58	0	691	646	186	58	62	21	0	0	0.7
2	null	110	453	463	134	165	179	74	0	109	105	41	64	68	24	0	0	2.678
3	0.46	110	1196	1204	231	163	180	70	0	633	644	95	64	68	23	0	0	0.86
4	-0.98	100	634	664	182	177	208	81	0	522	520	118	58	61	22	0	0	-0.022
5	-0.16	100	1490	1451	409	222	252	125	0	1467	1317	455	55	59	21	0	0	-0.155
6	null	90	1085	1100	199	320	321	162	0	349	359	88	62	65	24	0	-100	1.414
7	null	90	1248	1310	297	384	379	137	0	87	89	36	64	65	25	0	-100	5.231
8	null	110	1724	1714	314	478	501	156	0	117	112	35	81	94	30	0	-100	5.113
9	null	90	1702	1718	272	442	483	138	0	557	567	101	76	86	30	0	-100	1.389
10	null	90	1348	1298	200	365	379	93	0	261	263	68	63	66	23	0	-100	2.312
11	0.79	110	6527	5979	1775	341	404	113	0	5715	5370	1119	62	91	22	0	0	0.13
12	null	90	1007	1021	201	270	316	134	0	321	338	89	57	86	21	0	-100	1.481
13	null	110	1641	1636	292	194	245	90	0	725	719	99	60	87	24	0	-100	1.122
14	-0.21	100	1410	1222	501	209	247	85	0	1413	1316	533	54	65	20	0	0	-0.178
15	-0.47	100	1902	1817	456	229	240	85	0	2751	2601	524	59	63	23	0	0	-0.686
16	0.04	100	798	779	158	241	253	83	0	297	284	88	57	62	22	0	0	1.215
17	0.25	110	1616	1562	356	220	225	85	0	1208	1210	204	59	62	21	0	0	0.281
18	null	90	509	531	122	195	207	75	0	90	89	23	60	62	23	0	0	3.388
19	0.29	130	1495	1438	300	158	171	65	0	1098	1039	280	58	62	21	0	0	0.362
20	null	140	571	562	142	148	158	61	0	83	84	30	56	59	22	0	0	3.97

Total number of rows: 22176

Table truncated, full table size 1524 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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