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Sample GSM124882

Query DataSets for GSM124882

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_0422, rep2

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_0422

Organism

Characteristics

Charolais, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from a charolais fetal calf at 260 days of gestation (male).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.46	90	1377	1348	169	359	386	123	0	586	582	87	67	81	26	0	0	0.972
2	null	100	762	772	181	298	349	114	0	127	129	40	64	77	23	0	0	2.881
3	0.93	100	1768	1740	328	285	356	106	0	716	701	143	60	69	24	0	0	1.177
4	0.04	100	1151	1121	272	309	347	110	0	614	613	122	55	63	22	0	0	0.591
5	0.34	90	1909	1884	358	286	311	116	0	1405	1409	238	58	69	23	0	0	0.269
6	0.79	90	1208	1201	272	286	313	119	0	336	335	83	60	70	25	0	0	1.74
7	null	90	1007	1050	236	249	259	106	0	100	102	32	60	63	25	0	0	4.244
8	null	100	1420	1395	290	297	304	119	0	112	111	36	61	63	24	0	0	4.461
9	0.64	100	1496	1462	411	407	422	124	0	549	517	150	63	66	25	0	0	1.164
10	1.10	90	1392	1386	189	384	386	149	0	291	284	67	58	60	21	0	0	2.113
11	1.11	100	5566	4965	1435	308	376	108	0	3586	3240	977	60	100	23	0	0	0.576
12	1.23	90	1190	1243	290	293	320	100	0	209	209	43	62	64	27	0	0	2.609
13	1.87	120	1979	1888	488	298	343	109	0	362	373	111	61	80	25	0	0	2.481
14	0.78	90	1816	1762	486	268	284	87	0	878	867	220	58	60	24	0	0	0.917
15	0.35	140	1632	1639	908	226	248	90	0	1116	1019	700	53	56	23	0	0	0.403
16	1.39	120	1073	1006	427	212	226	83	0	164	154	73	53	56	22	0	0	2.955
17	1.03	110	1790	1797	331	221	248	99	0	717	726	125	58	61	22	0	0	1.251
18	null	110	1327	1256	398	241	418	139	0	92	95	36	60	63	22	0	-100	5.085
19	null	110	1873	1844	396	321	417	270	0	665	658	124	64	74	25	0	-100	1.369
20	null	130	1262	1251	299	316	426	197	0	89	92	40	62	71	25	0	-100	5.131

Total number of rows: 22176

Table truncated, full table size 1513 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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