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Sample GSM124880

Query DataSets for GSM124880

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_C108, rep4

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_C108

Organism

Characteristics

INRA95, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from INRA95 fetal calf at 260 days of gestation (male). The animal is a heterozygote for the myostatin Q204X mutation.

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	null	90	1247	1243	146	494	553	159	0	377	393	71	60	75	26	0	-100	1.248
2	null	100	793	784	231	410	470	145	0	77	79	25	55	68	24	0	-100	4.122
3	null	100	1337	1332	226	426	447	142	0	467	482	105	53	57	22	0	-100	1.138
4	null	100	937	961	233	493	550	189	0	339	339	95	53	57	23	0	-100	0.635
5	0.37	90	1901	1952	424	555	622	228	0	967	940	130	55	58	21	0	0	0.562
6	null	90	1626	1684	428	546	587	231	0	213	216	55	57	60	22	0	-100	2.791
7	null	90	1522	1524	312	463	502	246	0	78	76	29	55	56	24	0	-100	5.525
8	null	120	1198	1221	393	367	442	232	0	86	87	40	54	57	21	0	-100	4.699
9	null	100	1319	1282	413	346	447	232	0	265	259	82	57	58	23	0	-100	2.226
10	null	90	688	699	211	241	424	156	0	166	163	50	56	59	24	0	-100	2.023
11	0.49	100	4715	4355	1228	206	357	105	0	4395	4006	1111	60	100	23	0	0	0.057
12	null	80	528	535	91	184	201	80	0	195	201	47	57	66	22	0	0	1.318
13	0.95	120	1067	1030	252	196	494	82	0	285	291	88	58	68	23	0	0	1.94
14	-0.38	90	1086	1201	671	226	630	94	0	940	917	162	55	62	21	0	0	-0.041
15	-0.05	100	1617	1546	343	238	414	104	0	1437	1379	337	56	64	22	0	0	-0.002
16	null	100	991	971	253	238	308	98	0	157	163	61	54	64	21	0	-100	2.87
17	0.95	110	1850	1945	821	248	540	105	0	766	754	138	53	59	21	0	0	1.168
18	null	80	920	947	218	256	278	101	0	68	70	26	52	55	21	0	-100	5.375
19	1.03	120	2149	2121	460	251	261	106	0	912	915	218	52	56	20	0	0	1.142
20	null	140	1115	1116	295	253	297	101	0	72	76	30	53	57	20	0	-100	5.504

Total number of rows: 22176

Table truncated, full table size 1512 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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