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Sample GSM124874

Query DataSets for GSM124874

Status

Public on Jul 17, 2007

Title

Fetal calf 260 days, ST_C107, rep2

Sample type

RNA

Channel 1

Source name

Fetal calf 260 days, ST_C107

Organism

Characteristics

INRA95, Fetal calf 260 days p.c., Double-Muscled

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 21 samples (ST muscle )

Organism

Characteristics

Pool of 16 samples of 24 months charolais heifers and of 5 samples of charolais fetal calf aged 260 days (ST muscle )

Extracted molecule

total RNA

Label

Cy5

Description

Semitendinosus (ST) muscle from INRA95 fetal calf at 260 days of gestation (male). The animal is a homozygote for the myostatin Q204X mutation.

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 03, 2006

Last update date

Jul 17, 2007

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of target genes of myostatin loss-of-function in the muscle of bovine fetuses

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	null	100	731	781	349	165	193	67	0	158	171	71	59	63	23	0	0	2.515
2	null	80	567	561	157	171	218	80	0	65	75	41	59	63	22	0	0	6.044
3	-0.46	110	522	527	119	142	163	51	0	262	268	81	59	63	24	0	0	0.905
4	null	100	318	329	109	127	139	51	0	145	158	59	60	62	25	0	0	1.168
5	-0.91	100	504	520	173	137	143	56	0	385	393	122	56	61	21	0	0	0.158
6	null	80	399	408	118	142	149	61	0	126	139	47	60	65	23	0	0	1.961
7	null	90	410	420	83	144	153	58	0	92	88	27	59	62	22	0	0	3.011
8	null	100	591	591	134	140	149	55	0	96	93	33	61	63	22	0	0	3.688
9	-0.05	100	582	589	165	132	139	54	0	228	252	119	57	61	22	0	0	1.396
10	null	80	388	406	124	131	136	49	0	115	118	46	62	64	24	0	0	2.278
11	0.00	110	1409	1461	432	144	154	62	0	1323	1470	440	62	68	24	0	0	0.005
12	null	80	454	454	132	132	139	53	0	100	97	31	61	63	23	0	0	3.046
13	null	120	780	751	191	131	147	53	0	155	163	69	60	83	22	0	0	2.772
14	-0.04	80	549	513	123	125	131	53	0	216	215	80	65	68	24	0	0	1.49
15	-0.06	90	810	808	171	126	147	53	0	490	526	130	65	74	26	0	0	0.687
16	null	90	500	521	116	129	140	52	0	107	106	37	63	66	23	0	0	3.076
17	null	110	640	634	124	138	141	55	0	153	168	60	57	60	23	0	0	2.387
18	null	90	437	450	127	145	151	59	0	69	71	26	55	57	20	0	0	4.382
19	0.45	130	774	787	180	163	171	64	0	229	230	79	59	61	21	0	0	1.846
20	null	140	703	690	164	217	235	88	0	69	73	31	61	65	24	0	0	5.925

Total number of rows: 22176

Table truncated, full table size 1516 Kbytes.

Supplementary data files not provided

Processed data included within Sample table

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