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Sample GSM124654

Query DataSets for GSM124654

Status

Public on Aug 19, 2006

Title

Bull 19 months, LT_02588, Replicate2

Sample type

RNA

Channel 1

Source name

Bull 19 months, LT_02588

Organism

Characteristics

Charolais 2003, Bull 19 months, T+, Jm, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples(muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle of Charolais bull calves at 19 months of age. This muscle gives a meat which is tender (T+) and which is of average Flavor (Fm) and juiciness (Jm)

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.81	90	1947	1962	280	145	203	49	0	895	913	131	105	138	47	0	0	1.19
2	null	90	516	517	98	136	170	51	0	193	189	66	98	123	41	0	0	2
3	0.21	110	2781	2733	384	133	151	51	0	2118	2062	379	91	106	39	0	0	0.386
4	0.45	100	1354	1332	237	151	210	58	0	734	719	189	90	98	39	0	0	0.902
5	0.43	110	4698	4192	1319	156	208	57	0	3209	2912	832	97	111	39	0	0	0.545
6	0.15	90	1000	1060	200	135	152	49	0	658	650	88	111	124	40	0	0	0.661
7	null	100	288	287	84	118	130	44	0	128	132	57	104	113	42	0	-50	2.824
8	null	100	573	568	140	129	135	47	0	153	166	64	95	101	41	0	0	2.936
9	0.41	100	1555	1485	379	140	146	49	0	927	868	269	106	112	45	0	0	0.785
10	0.45	90	1155	1165	154	152	158	54	0	637	646	123	126	133	47	0	0	0.973
11	0.37	100	8781	8235	1757	192	198	71	0	6658	6149	1508	131	146	49	0	0	0.396
12	null	90	831	815	158	200	206	62	0	376	402	122	136	144	49	0	0	1.395
13	1.04	110	1660	1630	307	170	193	56	0	633	622	138	125	138	49	0	0	1.552
14	0.48	90	2800	2705	445	138	161	51	0	1774	1727	281	136	147	58	0	0	0.701
15	-0.11	100	3119	2892	783	117	143	50	0	3175	3002	725	132	155	58	0	0	-0.02
16	0.61	90	684	695	95	108	140	44	0	323	318	80	124	164	52	0	0	1.533
17	0.05	100	1868	1808	436	93	104	33	0	1573	1516	348	101	120	42	0	0	0.27
18	null	70	295	291	88	98	100	37	0	159	146	55	95	96	39	0	0	1.622
19	-0.24	100	1634	1598	527	90	94	33	0	1686	1605	565	95	102	36	0	0	-0.043
20	null	120	348	360	92	82	89	34	0	133	128	46	94	117	37	0	0	2.77

Total number of rows: 22176

Table truncated, full table size 1501 Kbytes.

Supplementary data files not provided

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