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Sample GSM124653

Query DataSets for GSM124653

Status

Public on Aug 19, 2006

Title

Bull 19 months, LT_02588, Replicate1

Sample type

RNA

Channel 1

Source name

Bull 19 months, LT_02588

Organism

Characteristics

Charolais 2003, Bull 19 months, T+, Jm, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples(muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle of Charolais bull calves at 19 months of age. This muscle gives a meat which is tender (T+) and which is of average Flavor (Fm) and juiciness (Jm)

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.01	110	674	639	201	62	73	23	0	790	777	186	77	90	33	0	0	-0.22
2	null	100	246	249	60	65	75	24	0	236	268	138	80	92	34	0	0	0.214
3	-0.38	100	1188	1127	249	66	68	25	0	2236	2167	357	78	85	35	0	0	-0.944
4	-0.01	100	594	540	163	69	73	26	0	658	666	210	79	88	34	0	0	-0.141
5	-0.14	100	1184	1098	355	72	74	27	0	1851	1677	623	78	87	31	0	0	-0.673
6	-0.37	90	405	409	67	76	79	28	0	461	475	125	80	89	34	0	0	-0.212
7	null	80	226	232	62	84	90	29	0	121	126	47	87	93	34	0	0	2.062
8	null	100	382	378	116	79	80	29	0	164	169	64	85	89	35	0	0	1.939
9	0.04	100	591	569	216	79	80	31	0	618	602	232	86	90	35	0	0	-0.055
10	-0.23	100	692	653	229	70	74	27	0	983	933	396	86	94	36	0	0	-0.528
11	-0.03	100	2379	2211	561	69	75	23	0	3904	3578	1048	91	97	38	0	0	-0.723
12	null	90	304	306	89	73	81	27	0	294	302	82	109	111	43	0	0	0.32
13	0.72	100	714	691	158	90	108	34	0	508	519	146	121	136	54	0	0	0.689
14	0.03	90	984	890	291	70	75	28	0	1297	1292	342	95	107	41	0	0	-0.395
15	-0.18	90	1372	1329	242	66	77	25	0	2310	2303	268	92	106	42	0	0	-0.764
16	-0.01	90	351	368	95	65	69	22	0	292	310	89	92	99	40	0	0	0.516
17	-0.12	100	659	625	232	67	70	26	0	848	804	278	88	96	36	0	0	-0.36
18	null	70	202	212	43	68	70	27	0	162	173	73	97	108	41	0	0	1.044
19	-0.36	100	672	625	220	61	62	24	0	1067	1009	338	88	96	40	0	0	-0.68
20	null	120	285	282	84	65	67	24	0	138	150	57	83	90	40	0	0	2

Total number of rows: 22176

Table truncated, full table size 1486 Kbytes.

Supplementary data files not provided

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