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Sample GSM124630

Query DataSets for GSM124630

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02576, rep1

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02576

Organism

Characteristics

Charolais 2003, Bull 15 months ICm, Tm, Jm, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a mean growth potential (ICm). This muscle gives a meat which is of average tenderness (Tm), juiciness (Jm) and flavor (Fm).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.6	100	1482	1423	343	84	98	29	0	907	877	213	87	97	35	0	0	0.77
2	null	100	291	294	72	84	98	31	0	179	193	66	89	99	34	0	0	1.202
3	0.27	100	3356	3259	570	85	105	29	0	2914	2803	499	87	101	34	0	0	0.21
4	0.33	100	1109	1082	221	87	103	32	0	782	765	186	86	100	36	0	0	0.554
5	0.36	110	3919	3668	909	91	98	30	0	3240	3046	837	87	92	33	0	0	0.28
6	0.52	100	1120	1054	288	97	101	31	0	693	647	193	94	99	37	0	0	0.772
7	null	90	258	255	70	96	101	28	0	136	138	50	92	98	35	0	0	1.88
8	null	100	341	352	86	96	100	32	0	137	135	49	92	100	34	0	0	2.445
9	0.38	90	1369	1311	299	107	116	34	0	958	967	180	94	105	38	0	0	0.547
10	0.16	100	1055	988	270	104	117	34	0	829	785	239	99	111	36	0	0	0.382
11	0.29	110	6742	5946	1901	102	130	31	0	6151	5662	1269	103	127	40	0	0	0.135
12	0.48	90	652	647	114	111	126	34	0	382	376	74	112	125	44	0	0	1.003
13	1.08	110	1418	1370	272	110	130	34	0	621	629	117	109	121	38	0	0	1.353
14	0.25	100	2114	1857	640	112	133	37	0	1770	1576	518	111	125	41	0	0	0.271
15	-0.15	110	2654	2509	508	128	135	41	0	3053	2900	514	109	118	43	0	0	-0.221
16	0.51	100	596	580	130	110	125	38	0	331	334	98	106	118	40	0	0	1.111
17	0.29	110	1567	1519	353	83	89	28	0	1239	1176	375	103	112	39	0	0	0.386
18	null	70	257	256	53	83	85	30	0	145	142	27	88	97	31	0	0	1.61
19	-0.07	100	1586	1468	486	90	91	32	0	1614	1513	433	87	92	32	0	0	-0.03
20	null	110	306	308	70	84	90	30	0	115	123	41	95	99	34	0	0	3.472

Total number of rows: 22176

Table truncated, full table size 1500 Kbytes.

Supplementary data files not provided

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