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Sample GSM124616

Query DataSets for GSM124616

Status

Public on Aug 19, 2006

Title

Bull 19 months, LT_02562, Replicate3

Sample type

RNA

Channel 1

Source name

Bull 19 months, LT_02562

Organism

Characteristics

Charolais 2003, Bull 19 months, T, Jm, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples(muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle of Charolais bull calves at 19 months of age. This muscle gives a meat which is of average tenderness (T), Flavor (Fm) and juiciness (Jm)

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.82	90	1574	1513	277	87	108	38	0	854	858	208	70	82	32	0	0	0.923
2	null	100	547	533	118	95	110	40	0	170	183	65	69	79	30	0	0	2.162
3	0.56	120	4293	3829	1242	101	105	38	0	3626	3340	1099	68	72	30	0	0	0.237
4	0.11	110	1172	1154	254	98	103	38	0	944	915	219	64	71	30	0	0	0.287
5	0.51	110	3908	3556	1157	119	128	49	0	3355	2989	1003	61	70	28	0	0	0.202
6	0.74	90	1615	1592	280	138	161	54	0	900	920	161	72	85	34	0	0	0.835
7	null	70	476	474	131	126	137	51	0	173	168	67	65	70	32	0	0	1.696
8	null	100	631	615	130	114	121	39	0	148	162	67	65	68	29	0	0	2.639
9	0.88	100	1673	1581	483	125	129	51	0	855	833	293	67	74	30	0	0	0.974
10	0.73	100	1484	1411	405	115	125	47	0	820	795	282	74	80	30	0	0	0.876
11	0.73	110	9196	8625	1416	120	133	46	0	7646	7376	1268	72	78	30	0	0	0.261
12	0.51	90	869	838	210	118	133	44	0	408	401	134	67	75	28	0	0	1.139
13	1.4	100	1905	1858	348	111	172	45	0	712	691	188	73	94	31	0	0	1.489
14	0.43	100	2288	2018	738	94	151	40	0	1880	1677	587	71	90	34	0	0	0.278
15	0.09	100	3084	2982	642	89	101	32	0	3455	3314	609	70	78	30	0	0	-0.177
16	0.51	100	774	779	196	103	113	45	0	345	354	112	70	78	30	0	0	1.287
17	0.62	100	2011	1851	524	97	105	43	0	1375	1333	444	70	76	30	0	0	0.553
18	null	90	331	336	102	97	108	35	0	106	109	35	62	68	27	0	0	2.411
19	0.2	110	1746	1640	508	93	102	34	0	1556	1529	357	64	72	28	0	0	0.148
20	null	120	464	466	133	90	105	33	0	108	115	53	64	72	28	0	0	3.087

Total number of rows: 22176

Table truncated, full table size 1497 Kbytes.

Supplementary data files not provided

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