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Sample GSM124608

Query DataSets for GSM124608

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02556, rep3

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02556

Organism

Characteristics

Charolais 2003, Bull 15 months ICm, T+, J-, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a mean growth potential (ICm). This muscle gives a meat which is tender (T+), not juicier (J-) and of average flavor (Fm).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	-0.2	90	725	748	133	147	168	62	0	430	423	84	81	91	36	0	0	0.728
2	null	70	435	446	110	132	149	59	0	160	169	71	87	95	32	0	0	2.053
3	-0.14	110	1768	1759	281	143	152	60	0	1709	1668	256	82	93	35	0	0	-0.002
4	-0.19	100	767	761	149	143	153	54	0	475	473	133	77	87	32	0	0	0.649
5	0.1	100	1607	1484	470	137	142	49	0	1169	1163	390	72	76	31	0	0	0.422
6	null	100	558	579	206	133	141	49	0	216	217	75	74	82	32	0	0	1.582
7	null	80	362	351	96	132	146	55	0	106	111	51	73	87	26	0	0	2.801
8	null	100	570	558	146	118	122	48	0	145	149	65	69	75	27	0	0	2.572
9	-0.05	100	934	882	318	130	138	52	0	596	577	196	67	74	29	0	0	0.604
10	-0.14	100	1428	1302	443	147	161	63	0	1243	1151	424	75	82	35	0	0	0.133
11	0.32	110	4343	4076	980	159	177	65	0	3342	3190	675	78	86	30	0	0	0.358
12	null	90	680	679	197	138	156	56	0	202	200	67	77	82	30	0	0	2.116
13	1.01	100	1124	1051	281	159	1303	71	0	268	284	93	81	624	33	0	0	2.367
14	0.31	90	1460	1403	249	195	213	73	0	790	744	141	87	92	34	0	0	0.848
15	0.19	100	1691	1654	403	193	204	72	0	1111	1114	286	91	95	35	0	0	0.554
16	null	100	750	734	178	198	209	78	0	210	215	78	85	93	34	0	0	2.143
17	0.74	90	1215	1225	169	203	221	79	0	377	390	91	84	90	33	0	0	1.788
18	null	80	497	513	112	172	187	66	0	131	136	49	79	90	32	0	0	2.644
19	0.08	90	1296	1275	264	165	201	58	0	853	864	193	79	102	34	0	0	0.547
20	null	110	652	678	140	164	176	60	0	114	125	61	72	80	30	0	0	3.538

Total number of rows: 22176

Table truncated, full table size 1502 Kbytes.

Supplementary data files not provided

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