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Sample GSM124603

Query DataSets for GSM124603

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02555, rep2

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02555

Organism

Characteristics

Charolais 2003, Bull 15 months ICm, Tm, Jm, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a mean growth potential (ICm). This muscle gives a meat which is of average tenderness (Tm), juiciness (Jm) and flavor (Fm).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	0.17	130	1165	1018	420	87	251	38	0	923	864	338	78	225	38	0	0	0.351
2	null	90	372	355	83	90	99	42	0	182	182	54	73	78	33	0	0	1.371
3	0.23	100	2567	2462	479	97	113	46	0	2447	2341	537	69	86	33	0	0	0.055
4	-0.4	100	675	687	161	117	140	55	0	568	538	160	72	88	36	0	0	0.17
5	0.01	100	2658	2610	612	90	105	44	0	3020	2896	740	72	79	34	0	0	-0.199
6	-0.09	90	913	918	201	77	86	33	0	798	800	126	75	84	35	0	0	0.21
7	null	80	300	310	96	73	82	34	0	131	142	52	66	76	35	0	0	1.804
8	0.9	100	488	478	122	70	80	32	0	133	144	60	78	87	38	0	0	2.926
9	0.16	100	1032	981	334	68	79	33	0	800	774	307	81	87	39	0	0	0.423
10	0.14	100	1254	1166	396	68	77	29	0	1078	1031	377	83	94	37	0	0	0.253
11	0.38	100	7421	6723	1845	73	83	32	0	7444	6600	2051	78	94	35	0	0	-0.004
12	-0.2	80	575	559	104	81	87	36	0	390	399	116	72	76	32	0	0	0.635
13	0.63	100	1192	1133	258	73	93	32	0	665	653	193	84	94	36	0	0	0.946
14	0.03	90	1881	1806	446	72	91	30	0	2000	1907	437	79	91	35	0	0	-0.087
15	-0.32	90	2360	2359	416	86	113	42	0	3409	3334	387	81	118	36	0	0	-0.549
16	-0.2	100	561	562	204	73	97	32	0	385	390	136	75	101	34	0	0	0.655
17	0.02	100	1374	1298	416	73	80	33	0	1337	1294	397	76	83	33	0	0	0.045
18	null	70	358	360	85	73	77	34	0	145	149	57	78	85	33	0	0	2.089
19	-0.14	100	1488	1444	402	78	231	36	0	1689	1584	496	83	175	41	0	0	-0.188
20	1	100	481	490	105	72	114	33	0	130	134	44	84	101	38	0	0	3.152

Total number of rows: 22176

Table truncated, full table size 1497 Kbytes.

Supplementary data files not provided

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