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Sample GSM124600

Query DataSets for GSM124600

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02551, rep3

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02551

Organism

Characteristics

Charolais 2003, Bull 15 months IC-, Tm, Jm, Fm, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a low growth potential (IC-). This muscle gives a meat which is of average tenderness (Tm), juiciness (Jm) and flavor (Fm).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	-0.24	90	604	601	126	98	114	40	0	447	472	120	90	100	44	0	0	0.503
2	null	50	239	245	42	131	150	68	0	149	151	24	83	93	40	0	0	0.71
3	-0.59	120	1194	1068	391	82	112	35	0	1788	1576	593	71	91	33	0	0	-0.627
4	-0.52	110	521	522	151	82	86	34	0	460	478	149	70	77	32	0	0	0.171
5	-0.52	100	1032	959	315	76	82	36	0	1381	1281	434	71	78	32	0	0	-0.454
6	-0.53	100	386	387	112	73	81	34	0	263	274	143	70	81	31	0	0	0.698
7	null	120	180	182	104	80	86	34	0	90	100	57	72	80	30	0	0	2.474
8	0.21	100	442	470	170	72	79	31	0	161	219	175	70	77	31	0	0	2.024
9	-0.26	100	801	753	289	75	80	31	0	740	689	263	76	84	32	0	0	0.129
10	-0.25	100	1992	1843	529	83	93	32	0	2452	2242	748	74	84	32	0	0	-0.317
11	-0.28	110	3038	2868	683	84	115	35	0	4083	3907	711	76	148	34	0	0	-0.44
12	null	100	354	352	105	79	95	35	0	195	212	77	73	101	36	0	0	1.173
13	0.31	100	694	689	149	78	163	33	0	328	335	87	72	104	31	0	0	1.267
14	-0.38	100	745	729	247	75	84	29	0	750	723	265	80	85	34	0	0	0
15	-0.21	100	1255	1237	269	73	78	33	0	1338	1293	283	81	88	36	0	0	-0.089
16	-0.49	100	433	427	99	75	91	33	0	328	331	116	78	102	34	0	0	0.518
17	-0.32	110	710	668	218	79	90	33	0	652	628	208	79	92	35	0	0	0.139
18	null	60	242	250	73	106	1352	52	0	98	100	38	82	1834	35	0	0	3.087
19	-0.38	100	908	891	307	84	103	35	0	988	973	325	77	103	36	0	0	-0.145
20	null	130	368	399	308	88	102	39	0	131	144	125	81	101	37	0	0	2.485

Total number of rows: 22176

Table truncated, full table size 1491 Kbytes.

Supplementary data files not provided

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