|
| Status |
Public on Aug 19, 2006 |
| Title |
Bull 15 months, LT_02551, rep1 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Bull 15 months, LT_02551
|
| Organism |
Bos taurus |
| Characteristics |
Charolais 2003, Bull 15 months IC-, Tm, Jm, Fm, Muscle LT
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
Pool of 5 samples (muscle LT) of 19 months bulls
|
| Organism |
Bos taurus |
| Characteristics |
Pool of 5 samples (muscle LT) of 19 months bulls
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a low growth potential (IC-). This muscle gives a meat which is of average tenderness (Tm), juiciness (Jm) and flavor (Fm).
|
| Data processing |
After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.
|
| |
|
| Submission date |
Aug 02, 2006 |
| Last update date |
Aug 18, 2006 |
| Contact name |
Isabelle CASSAR-MALEK |
| E-mail(s) |
[email protected]
|
| Organization name |
INRA
|
| Department |
Centre de Clermont-Fd/Theix
|
| Lab |
Equipe Croissance et métabolisme du Muscle (C2M)
|
| Street address |
Theix
|
| City |
Saint-Genès-Champanelle |
| ZIP/Postal code |
63122 |
| Country |
France |
| |
|
| Platform ID |
GPL4049 |
| Series (1) |
| GSE5561 |
Identification of novel markers of beef sensory quality and muscle growth potential |
|
| Data table header descriptions |
| ID_REF |
ID from Myochips M2 platform |
| VALUE |
Normalized log2 ratio of medians defined as CH1 divided by CH2 |
| dia |
Diameter of the spot |
| FCh1Median |
Channel 1 median intensity |
| FCh1Mean |
Channel 1 mean intensity |
| FCh1SD |
Channel 1 mean standard deviation |
| BCh1Median |
Channel 1 median background intensity |
| BCh1Mean |
Channel 1 mean background intensity |
| BCh1SD |
Channel 1 background standard deviation |
| percCh1Sat |
percentage of Channel 1 saturation |
| FCh2Median |
Channel 2 median intensity |
| FCh2Mean |
Channel 2 mean intensity |
| FCh2SD |
Channel 2 mean standard deviation |
| BCh2Median |
Channel 2 median background intensity |
| BCh2Mean |
Channel 2 mean background intensity |
| BCh2SD |
Channel 2 background standard deviation |
| percCh2Sat |
percentage of Channel 2 saturation |
| flags |
0 denotes satisfactory features, while <0 denotes features that did not meet |
| MValue |
log2 ratio of medians defined as CH1 divided by CH2 |
