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Sample GSM124597

Query DataSets for GSM124597

Status

Public on Aug 19, 2006

Title

Bull 15 months, LT_02548, rep4

Sample type

RNA

Channel 1

Source name

Bull 15 months, LT_02548

Organism

Characteristics

Charolais 2003, Bull 15 months ICm, T+, J+, F+, Muscle LT

Extracted molecule

total RNA

Label

Cy3

Channel 2

Source name

Pool of 5 samples (muscle LT) of 19 months bulls

Organism

Characteristics

Pool of 5 samples (muscle LT) of 19 months bulls

Extracted molecule

total RNA

Label

Cy5

Description

Longissimus thoracis (LT) muscle from Charolais bull calf at 15 months of age. The animal has a mean growth potential (ICm). This muscle gives a meat which is tender (T+), juicier (J+) and tasty (F+).

Data processing

After background correction and removal of flagged values, log base 2 expression ratios were normalized and scalled. This procedure is done with MADSCAN tool.

Submission date

Aug 02, 2006

Last update date

Aug 18, 2006

Contact name

Isabelle CASSAR-MALEK

E-mail(s)

[email protected]

Organization name

INRA

Department

Centre de Clermont-Fd/Theix

Lab

Equipe Croissance et métabolisme du Muscle (C2M)

Street address

Theix

City

Saint-Genès-Champanelle

ZIP/Postal code

63122

Country

France

Platform ID

Series (1)

Identification of novel markers of beef sensory quality and muscle growth potential

Data table header descriptions
ID_REF	ID from Myochips M2 platform
VALUE	Normalized log2 ratio of medians defined as CH1 divided by CH2
dia	Diameter of the spot
FCh1Median	Channel 1 median intensity
FCh1Mean	Channel 1 mean intensity
FCh1SD	Channel 1 mean standard deviation
BCh1Median	Channel 1 median background intensity
BCh1Mean	Channel 1 mean background intensity
BCh1SD	Channel 1 background standard deviation
percCh1Sat	percentage of Channel 1 saturation
FCh2Median	Channel 2 median intensity
FCh2Mean	Channel 2 mean intensity
FCh2SD	Channel 2 mean standard deviation
BCh2Median	Channel 2 median background intensity
BCh2Mean	Channel 2 mean background intensity
BCh2SD	Channel 2 background standard deviation
percCh2Sat	percentage of Channel 2 saturation
flags	0 denotes satisfactory features, while <0 denotes features that did not meet
MValue	log2 ratio of medians defined as CH1 divided by CH2

Data table
ID_REF	VALUE	dia	FCh1Median	FCh1Mean	FCh1SD	BCh1Median	BCh1Mean	BCh1SD	percCh1Sat	FCh2Median	FCh2Mean	FCh2SD	BCh2Median	BCh2Mean	BCh2SD	percCh2Sat	flags	MValue
1	-0.03	90	693	690	176	170	194	69	0	388	391	99	103	116	49	0	0	0.876
2	null	100	409	410	123	178	195	67	0	141	144	47	97	107	46	0	-50	2.392
3	-0.05	110	1809	1770	324	156	163	57	0	1655	1634	296	93	99	45	0	0	0.082
4	0.32	100	852	851	166	181	195	65	0	428	443	135	123	147	62	0	0	1.138
5	0.32	100	1832	1709	542	165	177	64	0	1260	1190	458	123	137	61	0	0	0.552
6	0.18	110	624	607	174	144	156	53	0	281	286	110	89	99	45	0	0	1.322
7	null	70	402	394	82	144	152	47	0	127	123	28	74	78	34	0	0	2.283
8	null	100	554	537	165	135	141	48	0	158	158	60	73	76	32	0	0	2.301
9	0.69	100	1461	1339	458	127	133	50	0	678	669	238	72	78	33	0	0	1.138
10	0.27	100	1267	1211	323	110	117	44	0	803	768	295	73	80	34	0	0	0.664
11	0.45	110	6652	5920	1837	103	146	39	0	5013	4754	1070	69	87	32	0	0	0.406
12	0.36	90	604	594	150	106	135	45	0	237	242	82	70	87	33	0	0	1.576
13	0.68	110	1056	1085	351	106	115	44	0	456	434	174	82	90	36	0	0	1.345
14	0.1	100	1529	1429	610	101	108	40	0	1224	1150	570	88	96	39	0	0	0.33
15	-0.02	100	2183	1979	538	86	96	38	0	2087	1904	542	78	82	38	0	0	0.062
16	-0.15	100	462	469	195	75	84	33	0	248	248	98	67	75	35	0	0	1.096
17	0.04	100	848	824	549	66	74	30	0	585	629	433	70	77	37	0	0	0.603
18	null	60	177	186	63	53	57	26	0	93	91	41	56	66	28	0	0	1.745
19	-0.66	90	385	433	252	61	69	28	0	290	330	213	61	68	28	0	0	0.501
20	null	110	382	394	97	94	99	38	0	104	115	50	78	84	38	0	0	3.469

Total number of rows: 22176

Table truncated, full table size 1500 Kbytes.

Supplementary data files not provided

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