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GEO accession:
Sample GSM1226584
Query DataSets for GSM1226584
Status
Public on Sep 23, 2013
Title
SUM159 miR-203 rep1
Sample type
RNA
Source name
SUM159
Organism
Homo sapiens
Characteristics
cell line: SUM159
treatment: pBabe puro miR-203
tissue: Claudin-low breast cancer
Extracted molecule
total RNA
Extraction protocol
standard Affymetrix protocol
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Data processing
MAS 5.0
Submission date
Sep 09, 2013
Last update date
Sep 23, 2013
Contact name
Joe Taube
E-mail(s)
[email protected]
Phone
7135637092
Organization name
MD Anderson Cancer Center
Department
Translational Molecular Pathology
Lab
Mani Lab
Street address
7435 Fannin St
City
Houston
State/province
Texas
ZIP/Postal code
77054
Country
USA
Platform ID
GPL570
Series (1)
GSE50697
Gene expression of SUM159 breast cancer cell line expressing microRNA--203
Data table header descriptions
ID_REF
VALUE
MAS 5.0 signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
970.625
P
0.000146581
AFFX-BioB-M_at
1175.05
P
4.42873e-05
AFFX-BioB-3_at
791.631
P
0.000126798
AFFX-BioC-5_at
2404.1
P
5.16732e-05
AFFX-BioC-3_at
3021.51
P
0.000258358
AFFX-BioDn-5_at
6076.07
P
4.42873e-05
AFFX-BioDn-3_at
11656.3
P
9.4506e-05
AFFX-CreX-5_at
32516.8
P
5.16732e-05
AFFX-CreX-3_at
34008
P
4.42873e-05
AFFX-DapX-5_at
390.751
P
0.000509415
AFFX-DapX-M_at
1468.78
P
0.000753643
AFFX-DapX-3_at
1643.05
P
7.00668e-05
AFFX-LysX-5_at
106.427
P
0.002867
AFFX-LysX-M_at
133.583
A
0.108979
AFFX-LysX-3_at
194.233
P
6.01289e-05
AFFX-PheX-5_at
144.395
P
0.00618711
AFFX-PheX-M_at
266.486
P
0.00762003
AFFX-PheX-3_at
288.098
P
0.000224668
AFFX-ThrX-5_at
10.7169
A
0.574038
AFFX-ThrX-M_at
127.036
P
0.0200219
Total number of rows:
54675
Table truncated, full table size
1626 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1226584_S1100958.MDA.04_HG-U133_Plus_2_.CEL.gz
4.8 Mb
(ftp)
(http)
CEL
GSM1226584_S1100958.MDA.04_HG-U133_Plus_2_.mas5.CHP.gz
490.3 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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