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Sample GSM122520 Query DataSets for GSM122520
Status Public on Jul 21, 2006
Title wild type 2 cell embryo rep2
Sample type RNA
 
Source name wild type 2 cell embryo rep2
Organism Mus musculus
Characteristics in vivo,2 cell stage, embryo
Extracted molecule total RNA
Extraction protocol Total RNA from 20 embryos was extracted and purified using an Picopure kit (Arcturus).
Label biotin
Label protocol total RNA from 20 embryos was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type whole embryo
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jul 21, 2006
Last update date Jul 21, 2006
Contact name Hua Pan
E-mail(s) [email protected]
Organization name University of Pennsylvania
Department Department of Biology
Street address 415 S University Avenue
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL1261
Series (1)
GSE5371 Maternal BRG1 regulates zygotic genome activation in the mouse

Data table header descriptions
ID_REF
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
VALUE MAS5-calculated Signal intensity

Data table
ID_REF ABS_CALL VALUE
1415670_at P 99.8
1415671_at P 677.1
1415672_at P 1205.7
1415673_at P 34.4
1415674_a_at P 250.1
1415675_at P 232.7
1415676_a_at P 931.5
1415677_at P 130.4
1415678_at P 2349
1415679_at P 2408
1415680_at P 402.7
1415681_at P 243.1
1415682_at P 306.7
1415683_at P 581.3
1415684_at P 484.5
1415685_at P 104
1415686_at P 758.3
1415687_a_at P 464.2
1415688_at P 2890
1415689_s_at A 86.9

Total number of rows: 45101

Table truncated, full table size 809 Kbytes.




Supplementary data files not provided

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