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Sample GSM121609 Query DataSets for GSM121609
Status Public on Jul 27, 2006
Title LPS Polysome Fraction
Sample type RNA
 
Source name Primary HUVEC, Treated with vehicle for 2 hours before subjecting to polysome profiling
Organism Homo sapiens
Characteristics Primary HUVEC cultured on gelatin coated flasks derived from 7 different umbilical cords, isolated as described by Jaffe, et al. Cells were grown to one day post-confluence before stimulating with LPS or vehicle for 2 hours.
Treatment protocol Control cells received an equal amount of HBSS as a vehicle control for LPS.
Extracted molecule total RNA
Label alpha-33P dCTP
 
Description These samples were collected as part of a polysome profiling experiment in which monosome and polysome associated mRNA was collected via centrifugation and fractionation using an Isco fractionator. This sample is the control monosome fraction used to calculate a translation index as follows: (histamine polysome/histamine monosome)/(control polysome/control monosome).
Data processing The value column was generated by dividing the SIGNAL_RAW values by the median signal intensity of the entire membrane. This was done in order to compare multiple array values.
 
Submission date Jul 19, 2006
Last update date Jul 26, 2006
Contact name Douglas I. Schmid
E-mail(s) [email protected]
Phone 801-585-0706
Fax 801-585-0701
Organization name University of Utah
Department HMBG
Street address 15 N. 2030 E., Room 4260
City Salt Lake City
State/province UT
ZIP/Postal code 84112
Country USA
 
Platform ID GPL538
Series (2)
GSE5352 Translation State Array Analysis of LPS Stimulated Human Endothelial Cells
GSE5393 Translation State Array Analysis

Data table header descriptions
ID_REF
BKD_RAW Determined by Pathways 3.0 software, average of background measurements across the membrane
SIGNAL_RAW Determined by Pathways 3.0 software, 75 micron measuring circles centered on the spot
VALUE Raw intensity divided by median signal intensity for the entire membrane

Data table
ID_REF BKD_RAW SIGNAL_RAW VALUE
1 1.487269229 13.6453152 1.51122095
2 1.487269229 5.734921318 0.635143499
3 1.487269229 4.75182485 0.5262654
4 1.487269229 2.270753907 0.251486376
5 1.487269229 2.563715732 0.283931948
6 1.487269229 9.658378178 1.069667005
7 1.487269229 13.00605104 1.440422337
8 1.487269229 67.22906262 7.445629974
9 1.487269229 5.167226853 0.572271242
10 1.487269229 7.364509507 0.815620665
11 1.487269229 10.46604347 1.159116072
12 1.487269229 9.968387453 1.104000584
13 1.487269229 5.791915129 0.641455573
14 1.487269229 4.157095419 0.460399016
15 1.487269229 2.724668526 0.301757497
16 1.487269229 28.38597013 3.143750958
17 1.487269229 11.82584632 1.309714466
18 1.487269229 6.148697299 0.680969258
19 1.487269229 20.65434443 2.287472114
20 1.487269229 4.169111518 0.461729801

Total number of rows: 4132

Table truncated, full table size 163 Kbytes.




Supplementary data files not provided

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