NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM121539 Query DataSets for GSM121539
Status Public on Sep 01, 2006
Title 514_adenoma_BAC
Sample type genomic
 
Channel 1
Source name Tumor DNA from patient 514 on BACarray platform
Organism Homo sapiens
Characteristics Tumor DNA from female patient with colorectal adenoma
Extracted molecule genomic DNA
Extraction protocol From fresh frozen tissue, twenty 30-microm-thick sections were cut from each tumor. DNA was isolated with the Genomic Wizard kit, according to the manufacturers protocol (Promega, Madison, WI)
Label Cy3
 
Channel 2
Source name male reference DNA
Organism Homo sapiens
Characteristics Gender mismatched pooled reference DNA
Extracted molecule genomic DNA
Label Cy5
 
 
Description Copy number analysis of colorectal tumors
Data processing limma
 
Submission date Jul 19, 2006
Last update date Jul 20, 2006
Contact name Jan Oosting
Phone +31 71 5266619
Organization name Leiden University Medical Center
Department Pathology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL4012
Series (1)
GSE5347 High Resolution Copy Number Analysis of Paraffin Embedded Archival Tissue Using SNP BeadArrays

Data table header descriptions
ID_REF
VALUE Green / Red normalized log2 transformed ratio
CN Clone specific copy number
GREEN Raw Green intensity
GREENBG Raw Green background
RED Raw Red intensity
REDBG Raw Red background
FLAGS Genepix Flags

Data table
ID_REF VALUE CN GREEN GREENBG RED REDBG FLAGS
1 -0.0690283645398433 1.89385712853147 5625 700 4384 408 0
2 -0.100750577096614 1.89385712853147 5885 714 4642 414 0
3 -0.0786725011544865 1.89385712853147 5942 731 4613 417 0
4 -0.106206900770512 1.85805486075560 6307 711 4975 406 0
5 -0.128468154481894 1.85805486075560 6069 727 4854 409 0
6 -0.0384956232155753 1.85805486075560 6553 724 4958 417 0
7 -0.0709536643042923 1.91933383849397 6114 721 4729 414 0
8 -0.0593943321084626 1.91933383849397 6107 734 4678 413 0
9 -0.0300158923682287 1.91933383849397 5796 719 4382 406 0
10 0.0324008600249405 2.05443910889209 4732 702 3524 398 0
11 0.0706724294904091 2.05443910889209 4984 714 3657 407 0
12 0.0387445713908201 2.05443910889209 4586 724 3374 411 0
13 -0.0101603162472595 1.98596429278889 7594 733 5625 407 0
14 -0.00115887089059136 1.98596429278889 7296 704 5381 412 0
15 -0.0133435439389463 1.98596429278889 7001 684 5218 410 0
16 -0.105472850683236 1.9055085766636 6926 732 5425 405 0
17 -0.0698238982880217 1.9055085766636 7144 727 5491 418 0
18 -0.0657185546662617 1.9055085766636 7035 707 5408 421 0
19 -0.0557770248055531 1.92415227298704 6339 699 4866 416 0
20 -0.0440001078940994 1.92415227298704 6527 710 4967 418 0

Total number of rows: 12800

Table truncated, full table size 724 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap