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Sample GSM120854 Query DataSets for GSM120854
Status Public on Jul 22, 2006
Title KPL_gd11_16_ovary_Mouse430_2_KWGU011601_a
Sample type RNA
 
Source name Gonad (Ovary) & mesonephros
Organism Mus musculus
Characteristics gene reported: wild-type
strain: CD-1
Sex: Female
developmental stage: gd 11
theiler stage: 18
somite count: NA
developmental landmark: NA
Treatment protocol pool size: 3
Pooled sample: Yes
Dissection Method: Whole organ excision
CD-1 mice are time-mated within a 2 hour window. Pregnant CD-1 mice are euthanized by standard carbon dioxide asphyxiation. All fetuses are killed by decapitation with a scalpel. Fetal ovaries are removed from fetuses at gestation days 11, 12, 14, 16, 18, and postnatal day 2, snap frozen in liquid nitrogen and stored at -80ÂșC.
Extracted molecule total RNA
Extraction protocol Gaido protocol: 'RNA isolation from whole testes'
Label Biotin
Label protocol -
 
Hybridization protocol Affymetrix standard protocol (701021 Rev 4)
Amount labeled target hybridization to array: 15 ug
Scan protocol -
Description >> Amplification protocol <<
Target Amplified manufacturer/kit: Affymetrix
Target Amplified protocol: Affymetrix Two-Cycle cDNA synthesis protocol (701025 Rev 5)
Rounds of amplification: 2
URL: http://gudmap.hgu.mrc.ac.uk/gudmap/pages/mic_submission.html?id=GUDMAP:2232
Data processing Analysis method: Affymetrix GCOS and SAS Microarray Solutions GCOS Tgt value: 500
 
Submission date Jul 18, 2006
Last update date Aug 28, 2018
Contact name GUDMAP Developers
E-mail(s) [email protected]
Phone +44 131 651 8500
Organization name IGMM MRC Human Genetics Unit
Lab GUDMAP Database Group
Street address Crewe Road
City Edinburgh
ZIP/Postal code EH4 2XU
Country United Kingdom
 
Platform ID GPL1261
Series (1)
GSE5334 Gene expression profiling of whole ovary in embryonic (gestional day 11, 12, 14, 16 & 18) and postnatal day 2 mice. (GUDMAP Series ID: 5)
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 554.51 P 0.000509
AFFX-BioB-M_at 845.75 P 0.000060
AFFX-BioB-3_at 521.11 P 0.000052
AFFX-BioC-5_at 1534.44 P 0.000052
AFFX-BioC-3_at 1705.38 P 0.000044
AFFX-BioDn-5_at 3570.16 P 0.000044
AFFX-BioDn-3_at 5286.12 P 0.000044
AFFX-CreX-5_at 18222.35 P 0.000052
AFFX-CreX-3_at 20456.97 P 0.000044
AFFX-DapX-5_at 98.69 P 0.000169
AFFX-DapX-M_at 560.08 P 0.000662
AFFX-DapX-3_at 787.94 P 0.000060
AFFX-LysX-5_at 6.83 A 0.500000
AFFX-LysX-M_at 76.81 P 0.006871
AFFX-LysX-3_at 255.86 P 0.000095
AFFX-PheX-5_at 41.73 P 0.008440
AFFX-PheX-M_at 88.21 P 0.000972
AFFX-PheX-3_at 217.02 P 0.001102
AFFX-ThrX-5_at 41.38 A 0.139482
AFFX-ThrX-M_at 76.83 P 0.003595

Total number of rows: 45101

Table truncated, full table size 1275 Kbytes.




Supplementary file Size Download File type/resource
GSM120854.CEL.gz 3.7 Mb (ftp)(http) CEL

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