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GEO accession:
Sample GSM120191
Query DataSets for GSM120191
Status
Public on Sep 30, 2007
Title
2002-01-10_2399-120
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 120 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 120 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
-0.037050523
0.918225765
FALSE
-0.037050523
E. coli control
48.29642868
TRUE
1.683915019
empty
19.46293831
TRUE
1.289208412
Human Control
0.009237821
1.02149868
FALSE
0.009237821
Lambda Control
0.07436128
1.186755538
FALSE
0.07436128
n1
0.007729734
1.017957687
FALSE
0.007729734
n2
-0.002307734
0.994700313
FALSE
-0.002307734
p1
0.00367186
1.008490562
FALSE
0.00367186
p2
0.005357056
1.012411475
FALSE
0.005357056
Phi174 Control
0.193600997
1.561712146
FALSE
0.193600997
YAL001C
-0.012927359
0.970672309
FALSE
-0.012927359
YAL002W
-0.034459651
0.923720002
FALSE
-0.034459651
YAL003W
0.053545971
1.131217122
FALSE
0.053545971
YAL004W
-0.020296637
0.954340518
FALSE
-0.020296637
YAL005C
0.054211181
1.13295114
FALSE
0.054211181
YAL007C
-0.047149777
0.897119343
FALSE
-0.047149777
YAL008W
1.177915692
TRUE
0.071114205
YAL009W
0.018054567
1.042448402
FALSE
0.018054567
YAL010C
-0.026556317
0.940683842
FALSE
-0.026556317
YAL011W
-0.074455485
0.842450738
FALSE
-0.074455485
Total number of rows:
6228
Table truncated, full table size
305 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120191.gpr.gz
497.3 Kb
(ftp)
(http)
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