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GEO accession:
Sample GSM120189
Query DataSets for GSM120189
Status
Public on Sep 30, 2007
Title
2002-01-10_2399-110
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 110 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 110 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
0.077794828
1.196175337
FALSE
0.077794828
E. coli control
1.701006055
TRUE
0.230705872
empty
1.314381599
TRUE
0.118721463
Human Control
0.21710372
1.648556113
FALSE
0.21710372
Lambda Control
0.223030984
1.671209812
FALSE
0.223030984
n1
0.008123945
1.018882155
FALSE
0.008123945
n2
-0.00434677
0.990041137
FALSE
-0.00434677
p1
-0.020583833
0.953709602
FALSE
-0.020583833
p2
0.007903795
1.018365741
FALSE
0.007903795
Phi174 Control
0.162853256
1.45496738
FALSE
0.162853256
YAL001C
0.012332117
1.028802753
FALSE
0.012332117
YAL002W
-0.033410791
0.925953567
FALSE
-0.033410791
YAL003W
0.088917971
1.227207422
FALSE
0.088917971
YAL004W
-0.338484317
0.458686203
FALSE
-0.338484317
YAL005C
0.029916192
1.071312547
FALSE
0.029916192
YAL007C
0.051034328
1.124693871
FALSE
0.051034328
YAL008W
0.089584984
1.229093671
FALSE
0.089584984
YAL009W
0.042931497
1.103904486
FALSE
0.042931497
YAL010C
-0.018580424
0.958119273
FALSE
-0.018580424
YAL011W
-0.109928928
0.776374161
FALSE
-0.109928928
Total number of rows:
6228
Table truncated, full table size
305 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120189.gpr.gz
489.3 Kb
(ftp)
(http)
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