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GEO accession:
Sample GSM120179
Query DataSets for GSM120179
Status
Public on Sep 30, 2007
Title
2002-01-10_2399-60
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 60 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 60 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
0.0278308
1.066180706
FALSE
0.0278308
E. coli control
1.146914244
TRUE
0.059530936
empty
0.76865536
TRUE
-0.114268333
Human Control
0.223386258
1.6725775
FALSE
0.223386258
Lambda Control
0.602013946
TRUE
-0.220393464
n1
0.022521814
1.05322659
FALSE
0.022521814
n2
0.020308062
1.04787159
FALSE
0.020308062
p1
0.010771529
1.02511251
FALSE
0.010771529
p2
0.002392537
1.005524278
FALSE
0.002392537
Phi174 Control
0.01
TRUE
-2
YAL001C
-0.000608513
0.998599827
FALSE
-0.000608513
YAL002W
-0.005560705
0.987277627
FALSE
-0.005560705
YAL003W
0.058885414
1.145210743
FALSE
0.058885414
YAL004W
-0.110197179
0.775894761
FALSE
-0.110197179
YAL005C
0.076539777
1.192723513
FALSE
0.076539777
YAL007C
-0.061892275
0.86717695
FALSE
-0.061892275
YAL008W
0.066885002
1.166500688
FALSE
0.066885002
YAL009W
0.104585625
1.272288561
FALSE
0.104585625
YAL010C
-0.103002675
0.788855255
FALSE
-0.103002675
YAL011W
-0.045668405
0.900184631
FALSE
-0.045668405
Total number of rows:
6228
Table truncated, full table size
305 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120179.gpr.gz
493.9 Kb
(ftp)
(http)
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