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GEO accession:
Sample GSM120176
Query DataSets for GSM120176
Status
Public on Sep 30, 2007
Title
2002-01-04_2399-45
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 45 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 45 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
0.040423177
1.097547174
FALSE
0.040423177
E. coli control
1.018408895
TRUE
0.007922176
empty
1.017936945
TRUE
0.007720897
Human Control
0.037404407
1.089944601
FALSE
0.037404407
Lambda Control
0.00582834
1.013510704
FALSE
0.00582834
n1
0.022589572
1.05339098
FALSE
0.022589572
n2
0.013052431
1.030510545
FALSE
0.013052431
p1
0.011846016
1.027651906
FALSE
0.011846016
p2
0.01514768
1.035494208
FALSE
0.01514768
Phi174 Control
0.013096829
TRUE
-1.882833839
YAL001C
-0.037752435
0.916742921
FALSE
-0.037752435
YAL002W
0.023401693
1.055362582
FALSE
0.023401693
YAL003W
0.00574374
1.013313294
FALSE
0.00574374
YAL004W
0.225421488
1.680434108
FALSE
0.225421488
YAL005C
0.251653433
1.785062552
FALSE
0.251653433
YAL007C
0.060868871
1.150452972
FALSE
0.060868871
YAL008W
0.011212913
1.026154876
FALSE
0.011212913
YAL009W
0.003985081
1.009218216
FALSE
0.003985081
YAL010C
0.017088527
1.040132165
FALSE
0.017088527
YAL011W
0.012860887
1.030056119
FALSE
0.012860887
Total number of rows:
6228
Table truncated, full table size
306 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120176.gpr.gz
504.1 Kb
(ftp)
(http)
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