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GEO accession:
Sample GSM120171
Query DataSets for GSM120171
Status
Public on Sep 30, 2007
Title
2002-01-04_2399-20
Sample type
RNA
Channel 1
Source name
Yeast yox1mutant cell cycle-time point 20 min
Organism
Saccharomyces cerevisiae
Characteristics
Yeast yox1 mutant cell cycle-time point 20 min
Treatment protocol
Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 10 min after relase.
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
Yeast (wild type) asynchronous culture
Organism
Saccharomyces cerevisiae
Characteristics
Yeast (wild type) asynchronous culture
Treatment protocol
Cells were grown overnight to an OD of 0.6 in YEPD
Extracted molecule
total RNA
Label
Cy3
Description
Yeast yox1 mutant cell cycle
Data processing
log10 ratio of medians[(F635-B635)/(F532-BF532)], normalized
Submission date
Jul 13, 2006
Last update date
Mar 21, 2007
Contact name
Tata Pramila
E-mail(s)
[email protected]
Phone
(206)6674483
Organization name
FHCRC
Department
Basic Sciences
Lab
Breeden Lab
Street address
1100, Fairview Avenue N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Platform ID
GPL1914
Series (1)
GSE5376
Cell cycle of yeast deleted for yox1
Data table header descriptions
ID_REF
Array identifier
VALUE
same as UNF_VALUE but with flagged values removed
RATIO
FLAG
UNF_VALUE
Normalized, log10 ratio of medians defined as Ch1 divided by Ch2[(F635-B635)/(F532-BF532)]
Data table
ID_REF
VALUE
RATIO
FLAG
UNF_VALUE
blank
-0.019900927
0.955210447
FALSE
-0.019900927
E. coli control
0.899245799
7.929500103
FALSE
0.899245799
empty
74.56456757
TRUE
1.872532487
Human Control
0.072935157
1.182864904
FALSE
0.072935157
Lambda Control
0.253911793
1.794369102
FALSE
0.253911793
n1
0.037532814
1.090266824
FALSE
0.037532814
n2
0.02023829
1.047703266
FALSE
0.02023829
p1
-0.00022396
0.99948442
FALSE
-0.00022396
p2
0.025199382
1.059740186
FALSE
0.025199382
Phi174 Control
0.266057342
1.84525907
FALSE
0.266057342
YAL001C
-0.062616848
0.865731359
FALSE
-0.062616848
YAL002W
-0.079864934
0.832022488
FALSE
-0.079864934
YAL003W
-0.08940059
0.813953161
FALSE
-0.08940059
YAL004W
-0.149517074
0.708733439
FALSE
-0.149517074
YAL005C
0.001607697
1.00370872
FALSE
0.001607697
YAL007C
0.122388527
1.325526834
FALSE
0.122388527
YAL008W
0.013080071
1.03057611
FALSE
0.013080071
YAL009W
0.086045191
1.219116449
FALSE
0.086045191
YAL010C
-0.064338289
0.862306595
FALSE
-0.064338289
YAL011W
0.053740893
1.131724954
FALSE
0.053740893
Total number of rows:
6228
Table truncated, full table size
306 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM120171.gpr.gz
517.5 Kb
(ftp)
(http)
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